Factsheet for Zm00001d005622_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005003_P002
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d013477_P008
Zm00001d028514_P002
Zm00001d028948_P001
Zm00001d033655_P003
Zm00001d033980_P001
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d043144_P001
Zm00001d047597_P001
Zm00001d047875_P003
Zm00001d052147_P001
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23810.1	Zm00001d005003_P002	AT2G41090.1	17360592
AT4G23810.1	Zm00001d008278_P001	AT2G41090.1	17360592
AT4G23810.1	Zm00001d010649_P001	AT2G41090.1	17360592
AT4G23810.1	Zm00001d028948_P001	AT2G41090.1	17360592
AT4G23810.1	Zm00001d038543_P004	AT2G41090.1	17360592
AT4G23810.1	Zm00001d038545_P001	AT2G41090.1	17360592
AT4G23810.1	Zm00001d041430_P001	AT2G41090.1	17360592
AT4G23810.1	Zm00001d043144_P001	AT2G41090.1	17360592
AT4G23810.1	Zm00001d047597_P001	AT2G41090.1	17360592
AT4G23810.1	Zm00001d052415_P001	AT2G41090.1	17360592
AT4G23810.1	Zm00001d005003_P002	AT2G41100.1	17360592
AT4G23810.1	Zm00001d008278_P001	AT2G41100.1	17360592
AT4G23810.1	Zm00001d010649_P001	AT2G41100.1	17360592
AT4G23810.1	Zm00001d028948_P001	AT2G41100.1	17360592
AT4G23810.1	Zm00001d038543_P004	AT2G41100.1	17360592
AT4G23810.1	Zm00001d038545_P001	AT2G41100.1	17360592
AT4G23810.1	Zm00001d041430_P001	AT2G41100.1	17360592
AT4G23810.1	Zm00001d043144_P001	AT2G41100.1	17360592
AT4G23810.1	Zm00001d047597_P001	AT2G41100.1	17360592
AT4G23810.1	Zm00001d052415_P001	AT2G41100.1	17360592
AT4G23810.1	Zm00001d013477_P008	AT4G08500.1	17587183
AT4G23810.1	Zm00001d028514_P002	AT4G08500.1	17587183
AT4G23810.1	Zm00001d033655_P003	AT4G08500.1	17587183
AT4G23810.1	Zm00001d047875_P003	AT4G08500.1	17587183
AT4G23810.1	Zm00001d052147_P001	AT4G08500.1	17587183
AT4G23810.1	Zm00001d033980_P001	AT4G14640.1	17360592
AT4G23810.1	Zm00001d005003_P002	AT5G21274.1	17360592
AT4G23810.1	Zm00001d008278_P001	AT5G21274.1	17360592
AT4G23810.1	Zm00001d010649_P001	AT5G21274.1	17360592
AT4G23810.1	Zm00001d028948_P001	AT5G21274.1	17360592
AT4G23810.1	Zm00001d038543_P004	AT5G21274.1	17360592
AT4G23810.1	Zm00001d038545_P001	AT5G21274.1	17360592
AT4G23810.1	Zm00001d041430_P001	AT5G21274.1	17360592
AT4G23810.1	Zm00001d043144_P001	AT5G21274.1	17360592
AT4G23810.1	Zm00001d047597_P001	AT5G21274.1	17360592
AT4G23810.1	Zm00001d052415_P001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96590	Sorghum	nucleus	80.36	81.1
Zm00001d020137_P001	Maize	nucleus	76.74	78.4
Os09t0334500-01	Rice	nucleus	56.19	51.52
Zm00001d020136_P001	Maize	nucleus	45.62	50.0
Zm00001d050247_P001	Maize	nucleus	37.16	38.44
GSMUA_Achr3P15840_001	Banana	nucleus	28.7	38.15
Zm00001d032265_P001	Maize	nucleus	38.07	37.84
VIT_15s0046g01140.t01	Wine grape	nucleus	30.82	31.58
GSMUA_Achr3P25080_001	Banana	nucleus	31.42	31.33
Solyc10g009550.2.1	Tomato	nucleus	26.59	30.34
PGSC0003DMT400051194	Potato	nucleus	26.59	30.34
VIT_16s0050g02510.t01	Wine grape	nucleus	32.93	29.95
KRH68901	Soybean	nucleus	32.02	29.28
Solyc05g050310.1.1	Tomato	cytosol, nucleus	5.14	28.81
KRH77637	Soybean	nucleus	27.79	28.57
KRG97154	Soybean	nucleus	30.82	28.18
Bra019265.1-P	Field mustard	nucleus	27.49	28.17
CDX89127	Canola	nucleus	23.57	28.16
Bra014426.1-P	Field mustard	nucleus	23.57	28.16
CDX94221	Canola	nucleus	27.19	28.04
CDY10969	Canola	nucleus	27.19	27.86
KRH60029	Soybean	nucleus	30.51	27.82
AT2G46400.1	Thale cress	nucleus	24.77	27.8
PGSC0003DMT400014949	Potato	nucleus	30.21	27.78
AT4G23810.1	Thale cress	nucleus	27.19	27.78
KRH53440	Soybean	nucleus	30.51	27.75
CDX95699	Canola	nucleus	23.87	27.72
KRH41300	Soybean	nucleus	29.91	27.58
KRH47935	Soybean	nucleus	30.51	27.37
Zm00001d011496_P002	Maize	nucleus	26.89	27.22
CDY47621	Canola	nucleus	25.98	27.22
KRH64503	Soybean	nucleus	29.91	27.2
AT5G24110.1	Thale cress	nucleus	24.77	27.06
Bra000423.1-P	Field mustard	nucleus	22.96	27.05
Bra004540.1-P	Field mustard	nucleus	23.26	27.02
CDY03518	Canola	nucleus	25.68	26.98
Bra013732.1-P	Field mustard	nucleus	25.68	26.9
Solyc08g082110.2.1	Tomato	nucleus	27.49	26.84
KRH06499	Soybean	nucleus	30.21	26.81
Solyc08g008280.2.1	Tomato	nucleus	29.0	26.67
VIT_02s0025g01280.t01	Wine grape	nucleus	27.49	26.61
CDX80015	Canola	nucleus	23.57	26.35
Zm00001d009619_P002	Maize	nucleus	23.57	26.26
CDX83367	Canola	nucleus	22.05	26.26
PGSC0003DMT400031695	Potato	nucleus	26.89	26.25
PGSC0003DMT400000599	Potato	nucleus	27.19	26.01
Bra026467.1-P	Field mustard	nucleus	24.47	25.96
CDX87141	Canola	nucleus	24.47	25.96
CDY42043	Canola	nucleus	22.96	25.94
CDY19847	Canola	nucleus	24.17	25.64
Solyc01g095630.2.1	Tomato	nucleus	25.98	25.6
CDX80414	Canola	nucleus	24.17	25.56
CDY65042	Canola	nucleus	25.38	25.45
Zm00001d044010_P001	Maize	nucleus	25.68	25.37
Solyc03g007380.1.1	Tomato	nucleus	26.59	24.93
AT4G11070.1	Thale cress	nucleus	23.57	24.92
PGSC0003DMT400023502	Potato	nucleus	26.59	24.72
CDX88077	Canola	nucleus	23.26	24.6
Bra009734.1-P	Field mustard	nucleus	23.26	24.6
CDY25271	Canola	nucleus	24.47	24.47
Bra033158.1-P	Field mustard	nucleus	24.47	24.47
Solyc05g050330.2.1	Tomato	nucleus	17.82	24.18
Solyc05g050300.1.1	Tomato	nucleus	13.9	23.59
PGSC0003DMT400046351	Potato	nucleus	21.45	23.59
PGSC0003DMT400084227	Potato	nucleus	20.24	22.79
Zm00001d036244_P001	Maize	nucleus	24.77	22.4
PGSC0003DMT400084214	Potato	nucleus	22.05	22.05
Zm00001d043060_P001	Maize	nucleus	19.03	22.03
Zm00001d045283_P001	Maize	nucleus	26.28	21.97
Solyc05g050340.2.1	Tomato	nucleus	21.45	21.71
Zm00001d043066_P001	Maize	nucleus	15.41	21.25
Zm00001d012505_P001	Maize	nucleus	16.92	21.21
Zm00001d023615_P001	Maize	plastid	22.96	19.95
Zm00001d023616_P001	Maize	plastid	22.96	19.95
Zm00001d043063_P001	Maize	nucleus	15.71	19.77
Zm00001d052357_P001	Maize	nucleus	13.6	19.74
Zm00001d043062_P001	Maize	nucleus	19.64	19.52
CDX80415	Canola	nucleus	8.46	18.92
Zm00001d028962_P001	Maize	nucleus	12.08	18.69
Zm00001d047523_P001	Maize	nucleus	18.13	18.46
Zm00001d022437_P001	Maize	mitochondrion, nucleus	18.73	18.34
Zm00001d012508_P001	Maize	mitochondrion	12.99	18.14
Zm00001d010617_P001	Maize	nucleus	17.22	17.98
Zm00001d010616_P001	Maize	nucleus, plastid	12.08	17.54
Zm00001d021581_P001	Maize	cytosol, mitochondrion, nucleus	6.04	17.09
Zm00001d005057_P001	Maize	nucleus	16.62	15.71
Zm00001d037854_P001	Maize	extracellular	19.03	15.4
Zm00001d052355_P001	Maize	nucleus	16.92	14.97
Zm00001d012507_P001	Maize	nucleus	15.11	14.2

Protein Annotations

EntrezGene:103647375	MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A1D6EP52	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	ProteinID:ONM21560.1
PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR32096	PANTHER:PTHR32096:SF33	SMART:SM00774	SUPFAM:SSF118290
UniParc:UPI000221A635	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	EnsemblPlantsGene:Zm00001d005622	EnsemblPlants:Zm00001d005622_P001	EnsemblPlants:Zm00001d005622_T001
SEG:seg	:	:	:	:	:

Description

WRKY-transcription factor 38WRKY74-superfamily of TFs having WRKY and zinc finger domains

Coordinates

chr2:+:180965628..180967221

Molecular Weight (calculated)

34783.7 Da

IEP (calculated)

6.557

GRAVY (calculated)

-0.436

Length

331 amino acids

Sequence
(BLAST)

001: MASTEMEMGV VGGGVNSSGG GSCGGLVVTE LSHIKELVRQ LEVHLGGSPD LCKHLASQIF SLTERSIGLI TSSNLDGARR QKRPAGDAGL ASPLSATPTS
101: DVTDGPFQST KKKRKVMEQR RQRVSSAGGE NPVEDGHSWR KYGQKEILGA KHPRGYYRCT HRHSQGCPAT KQVQRTDEDP TVYDVIYHGG HTCVHRAAAG
201: QAQATAPPEH RPDAHGHLRS LGAGLTVKTE TEEGLPAAAP LCLSASTPPV SGGGCPCPCL APSTPENWGV SPASSNSNHA ASYLPFEDAE WRGHAGLQEV
301: VSASAPPPPA VDSLDDLLLL VDIDDIASLF D

Best Arabidopsis Sequence Match ( AT2G46400.1 )
(BLAST)

001: MMMEEKLVIN ELELGKELAN RLMNNLKHTS SVDSNKTLIS DILRIYQNAI FMLSFNQDKN ILKRSLEIDG KDSKNVFKKR KVSEKNTEKV KVFVATEQEN
101: GSIDDGHCWR KYGQKEIHGS KNPRAYYRCT HRFTQDCLAV KQVQKSDTDP SLFEVKYLGN HTCNNITSPK TTTNFSVSLT NTNIFEGNRV HVTEQSEDMK
201: PTKSEEVMIS LEDLENKKNI FRTFSFSNHE IENGVWKSNL FLGNFVEDLS PATSGSAITS EVLSAPAAVE NSETADSYFS SLDNIIDFGQ DWLWS

Arabidopsis Description

WRKY46Probable WRKY transcription factor 46 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.