Factsheet for VIT_02s0025g01280.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01
VIT_12s0034g00240.t01
VIT_12s0034g00750.t01
VIT_12s0142g00700.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23810.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT4G23810.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT4G23810.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT4G23810.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT4G23810.1	VIT_12s0034g00240.t01	AT4G08500.1	17587183
AT4G23810.1	VIT_12s0034g00750.t01	AT4G08500.1	17587183
AT4G23810.1	VIT_12s0142g00700.t01	AT4G08500.1	17587183
AT4G23810.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT4G23810.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT4G23810.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60029	Soybean	nucleus	52.63	49.59
VIT_15s0046g01140.t01	Wine grape	nucleus	46.78	49.54
KRH41300	Soybean	nucleus	51.75	49.3
PGSC0003DMT400014949	Potato	nucleus	48.83	46.39
VIT_16s0050g02510.t01	Wine grape	nucleus	49.12	46.15
Solyc08g008280.2.1	Tomato	nucleus	47.95	45.56
PGSC0003DMT400031695	Potato	nucleus	45.03	45.43
Solyc08g082110.2.1	Tomato	nucleus	44.74	45.13
GSMUA_Achr3P15840_001	Banana	nucleus	32.75	44.98
KRH77637	Soybean	nucleus	38.3	40.68
Bra019265.1-P	Field mustard	nucleus	38.3	40.56
GSMUA_Achr7P14140_001	Banana	nucleus	42.11	40.0
CDY03518	Canola	nucleus	36.84	40.0
Bra013732.1-P	Field mustard	nucleus	36.84	39.87
CDX94221	Canola	nucleus	37.13	39.56
CDY47621	Canola	nucleus	36.55	39.56
GSMUA_Achr6P05710_001	Banana	nucleus	39.18	39.41
AT4G11070.1	Thale cress	nucleus	35.96	39.3
AT4G23810.1	Thale cress	nucleus	37.13	39.2
CDY10969	Canola	nucleus	36.84	39.01
GSMUA_Achr1P27980_001	Banana	nucleus	34.5	38.06
CDY65042	Canola	nucleus	36.55	37.88
GSMUA_Achr3P25080_001	Banana	nucleus	36.55	37.65
Bra033158.1-P	Field mustard	nucleus	36.26	37.46
CDY25271	Canola	nucleus	36.26	37.46
GSMUA_AchrUn_...	Banana	nucleus	31.29	36.27
HORVU2Hr1G029430.2	Barley	mitochondrion, nucleus	25.15	35.25
TraesCS3D01G238300.1	Wheat	nucleus	28.95	34.02
HORVU3Hr1G059210.1	Barley	nucleus	24.27	34.02
TraesCS2B01G187500.1	Wheat	nucleus	28.95	33.79
TraesCS2D01G168600.1	Wheat	nucleus	28.95	33.79
Os01t0656400-00	Rice	nucleus	26.32	32.85
HORVU3Hr1G059220.1	Barley	nucleus	29.53	32.79
TraesCS2A01G161500.1	Wheat	nucleus	28.36	32.77
HORVU5Hr1G034830.3	Barley	nucleus	31.58	32.53
TraesCS5B01G183700.1	Wheat	nucleus	32.16	32.45
Zm00001d032265_P001	Maize	nucleus	31.58	32.43
OQU80381	Sorghum	nucleus	32.16	32.35
TraesCS5D01G190700.1	Wheat	nucleus	32.16	32.26
Zm00001d050247_P001	Maize	nucleus	30.12	32.19
Zm00001d020136_P001	Maize	nucleus	28.07	31.79
TraesCS5A01G185600.1	Wheat	nucleus	31.87	31.78
TraesCS5B01G183800.1	Wheat	nucleus	31.87	31.5
Os11t0685700-00	Rice	nucleus	17.54	31.25
Os08t0386200-01	Rice	nucleus	28.95	31.03
TraesCS5D01G190800.1	Wheat	nucleus	31.58	30.77
EER96589	Sorghum	nucleus	27.78	30.65
Os05t0571200-01	Rice	nucleus	24.56	30.32
TraesCS1A01G410700.1	Wheat	nucleus	21.64	29.96
HORVU1Hr1G090190.2	Barley	nucleus	22.22	29.92
TraesCS1B01G440700.1	Wheat	nucleus	21.05	29.88
TraesCS5A01G185700.1	Wheat	nucleus	30.41	29.8
EES03370	Sorghum	nucleus	30.12	29.77
HORVU3Hr1G058670.1	Barley	nucleus	21.64	29.72
GSMUA_Achr10P...	Banana	extracellular, nucleus	26.9	29.68
TraesCS1D01G418000.1	Wheat	nucleus	21.34	29.67
Zm00001d011496_P002	Maize	nucleus	28.36	29.66
TraesCS1A01G410500.1	Wheat	nucleus	21.93	29.64
TraesCS1D01G418600.1	Wheat	nucleus	21.34	29.55
Os09t0334500-01	Rice	nucleus	30.99	29.36
HORVU1Hr1G090110.1	Barley	nucleus	21.64	29.25
TraesCS1D01G418500.1	Wheat	nucleus	20.47	28.93
Zm00001d020137_P001	Maize	nucleus	27.19	28.7
TraesCS1B01G440600.1	Wheat	nucleus	19.88	28.57
EER96590	Sorghum	nucleus	27.19	28.35
TraesCS1B01G440300.1	Wheat	nucleus	20.18	28.16
HORVU5Hr1G056130.2	Barley	nucleus	32.16	28.06
Zm00001d044010_P001	Maize	nucleus	27.19	27.76
HORVU1Hr1G090170.1	Barley	nucleus	19.88	27.53
EER87882	Sorghum	nucleus	30.41	27.51
Zm00001d005622_P001	Maize	nucleus	26.61	27.49
TraesCS1D01G418400.1	Wheat	nucleus	20.47	27.45
EES18716	Sorghum	nucleus	21.64	27.21
TraesCS1B01G440500.1	Wheat	nucleus	20.76	27.2
HORVU1Hr1G090130.4	Barley	nucleus	20.47	26.92
Zm00001d045283_P001	Maize	nucleus	30.7	26.52
Os06t0158100-00	Rice	nucleus	29.82	26.09
GSMUA_Achr4P15640_001	Banana	nucleus	26.61	26.07
TraesCS7B01G012600.1	Wheat	nucleus	27.78	25.61
TraesCS7D01G110600.1	Wheat	nucleus	27.49	25.54
Zm00001d036244_P001	Maize	nucleus	26.9	25.14
TraesCS1A01G410600.1	Wheat	nucleus	16.96	24.89
TraesCS7A01G116000.1	Wheat	nucleus	26.9	24.4
HORVU0Hr1G012740.1	Barley	nucleus	22.81	24.15
HORVU0Hr1G012750.1	Barley	nucleus	23.39	24.1
Zm00001d009619_P002	Maize	nucleus	20.47	23.57
VIT_13s0067g03140.t01	Wine grape	nucleus	20.76	22.68
VIT_08s0058g01390.t01	Wine grape	nucleus	22.51	21.57
VIT_13s0067g03130.t01	Wine grape	nucleus	20.76	19.51

Protein Annotations

EntrezGene:100253577	wikigene:100253577	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CBI34466	ProteinID:CBI34466.3
UniProt:D7TVE1	EMBL:FN596251	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100253577	wikigene:LOC100253577	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF26	SMART:SM00774	SUPFAM:SSF118290	TIGR:TC63010
UniParc:UPI00015CCBDE	ArrayExpress:VIT_02s0025g01280	EnsemblPlantsGene:VIT_02s0025g01280	EnsemblPlants:VIT_02s0025g01280.t01	unigene:Vvi.4149	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	RefSeq:XP_002272720	RefSeq:XP_002272720.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:1228115..1229951

Molecular Weight (calculated)

38563.8 Da

IEP (calculated)

6.503

GRAVY (calculated)

-0.793

Length

342 amino acids

Sequence
(BLAST)

001: MDTGLKWQQK TLVNELTQGM ELAKQLKIHL SPSSMSQTQE FLVHKIVASF EKALLIVKWS GPVENPQPVA PSSAPQSPLS VNGSPRTVSE DFDKGCKDHH
101: QEHKDFSKKR KTLPTWTDQV RVCSETGLEG PHDDGYNWRK YGQKDILGAK YPRSYYRCTY RNLHDCWATK QVQRSDEDPS MFEITYRGKH TCTQGSHSVP
201: APASPEKQEI KQNHHNDNNH QQQHYIENPL NYSSMASTSY GCMKSETSLF PQPSAFNKDN YDNLLGCYSP TFISPATSDS NCFSLSPCQM SNFGGPPNLQ
301: HSESELTEII SAANSPILNL EFPLDQVDFD PSFPFNTPGF FS

Best Arabidopsis Sequence Match ( AT4G11070.1 )
(BLAST)

001: MEMMNWERRS LLNELIHGLK AAKQLQGSSS PSLSASSSYL TTEIKENLLH NIVSSFKKAI LMLNGSTTQH NPTIELAPDP LAHPGKVPGS PASITGNPRS
101: EEFFNVRSKE FNLSSKKRKM LPKWTEQVRI SPERGLEGPH DDIFSWRKYG QKDILGAKFP RSYYRCTFRN TQYCWATKQV QRSDGDPTIF EVTYRGTHTC
201: SQGIPLPEKR ETKPKHTVAV NYQNLRASLT VRTGGLGSEA FSFPVTSPLY TYESINGGGT FYHHVGSSGP SDFTGLISTN TSTGSSPIFD VNFQFDPTAE
301: INTGFPTFFH NSI

Arabidopsis Description

WRKY41Probable WRKY transcription factor 41 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0Y8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.