CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92515
EES01631
EES09201
EES16322
KXG20217
KXG37587
KXG37588
OQU78227
OQU85800
OQU91136

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23810.1	EES01631	AT2G41090.1	17360592
AT4G23810.1	EES09201	AT2G41090.1	17360592
AT4G23810.1	EES16322	AT2G41090.1	17360592
AT4G23810.1	OQU78227	AT2G41090.1	17360592
AT4G23810.1	EES01631	AT2G41100.1	17360592
AT4G23810.1	EES09201	AT2G41100.1	17360592
AT4G23810.1	EES16322	AT2G41100.1	17360592
AT4G23810.1	OQU78227	AT2G41100.1	17360592
AT4G23810.1	EER92515	AT4G08500.1	17587183
AT4G23810.1	KXG20217	AT4G08500.1	17587183
AT4G23810.1	OQU85800	AT4G08500.1	17587183
AT4G23810.1	OQU91136	AT4G08500.1	17587183
AT4G23810.1	KXG37587	AT4G14640.1	17360592
AT4G23810.1	KXG37588	AT4G14640.1	17360592
AT4G23810.1	EES01631	AT5G21274.1	17360592
AT4G23810.1	EES09201	AT5G21274.1	17360592
AT4G23810.1	EES16322	AT5G21274.1	17360592
AT4G23810.1	OQU78227	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045283_P001	Maize	nucleus	76.19	72.73
Zm00001d036244_P001	Maize	nucleus	67.72	69.95
Os06t0158100-00	Rice	nucleus	53.97	52.17
TraesCS7D01G110600.1	Wheat	nucleus	47.88	49.18
TraesCS7B01G012600.1	Wheat	nucleus	47.88	48.79
TraesCS7A01G116000.1	Wheat	nucleus	47.88	48.01
VIT_15s0046g01140.t01	Wine grape	nucleus	29.1	34.06
CDY03518	Canola	nucleus	26.98	32.38
CDX94221	Canola	nucleus	26.98	31.78
Bra013732.1-P	Field mustard	nucleus	26.45	31.65
CDY47621	Canola	nucleus	26.19	31.33
Bra019265.1-P	Field mustard	nucleus	26.72	31.27
AT4G23810.1	Thale cress	nucleus	26.72	31.17
CDY10969	Canola	nucleus	26.45	30.96
AT4G11070.1	Thale cress	nucleus	25.4	30.67
VIT_02s0025g01280.t01	Wine grape	nucleus	27.51	30.41
Solyc08g082110.2.1	Tomato	nucleus	27.25	30.38
PGSC0003DMT400031695	Potato	nucleus	27.25	30.38
GSMUA_Achr1P27980_001	Banana	nucleus	24.87	30.32
PGSC0003DMT400014949	Potato	nucleus	28.57	30.0
GSMUA_AchrUn_...	Banana	nucleus	23.02	29.49
Solyc08g008280.2.1	Tomato	nucleus	27.78	29.17
KRH64503	Soybean	nucleus	28.04	29.12
EES18716	Sorghum	nucleus	20.9	29.04
KRH77637	Soybean	nucleus	24.6	28.88
VIT_16s0050g02510.t01	Wine grape	nucleus	27.78	28.85
KRH68901	Soybean	nucleus	27.51	28.73
CDY65042	Canola	nucleus	24.87	28.48
KRG97154	Soybean	nucleus	26.98	28.18
KRH60029	Soybean	nucleus	26.98	28.1
EER96589	Sorghum	nucleus	23.02	28.06
EES03370	Sorghum	nucleus	25.66	28.03
KRH53440	Soybean	nucleus	26.98	28.02
OQU80381	Sorghum	nucleus	24.87	27.65
CDY25271	Canola	nucleus	24.07	27.49
Bra033158.1-P	Field mustard	nucleus	24.07	27.49
KRH41300	Soybean	nucleus	25.93	27.3
Bra009734.1-P	Field mustard	nucleus	22.49	27.16
CDX88077	Canola	nucleus	22.49	27.16
AT5G24110.1	Thale cress	nucleus	21.69	27.06
Bra026467.1-P	Field mustard	nucleus	22.22	26.92
CDX87141	Canola	nucleus	22.22	26.92
CDX80414	Canola	nucleus	22.22	26.84
KRH47935	Soybean	nucleus	26.19	26.83
CDX89127	Canola	nucleus	19.58	26.71
Bra014426.1-P	Field mustard	nucleus	19.58	26.71
KRH06499	Soybean	nucleus	26.19	26.54
CDY19847	Canola	nucleus	21.69	26.28
Solyc10g009550.2.1	Tomato	nucleus	19.84	25.86
Solyc05g050300.1.1	Tomato	nucleus	13.23	25.64
PGSC0003DMT400051194	Potato	nucleus	19.31	25.17
EER96590	Sorghum	nucleus	21.69	25.0
Bra000423.1-P	Field mustard	nucleus	18.52	24.91
CDX83367	Canola	nucleus	18.25	24.82
GSMUA_Achr4P15640_001	Banana	nucleus	22.75	24.64
Bra004540.1-P	Field mustard	nucleus	18.52	24.56
Solyc03g007380.1.1	Tomato	nucleus	22.75	24.36
PGSC0003DMT400023502	Potato	nucleus	22.75	24.16
AT2G46400.1	Thale cress	nucleus	18.78	24.07
CDX80015	Canola	nucleus	18.78	23.99
CDY42043	Canola	nucleus	18.52	23.89
EES01666	Sorghum	nucleus	14.81	23.73
CDX95699	Canola	nucleus	17.72	23.51
PGSC0003DMT400000599	Potato	nucleus	20.9	22.83
EER94940	Sorghum	nucleus	13.49	22.67
Solyc01g095630.2.1	Tomato	nucleus	20.11	22.62
Solyc05g050330.2.1	Tomato	nucleus	14.55	22.54
PGSC0003DMT400084227	Potato	nucleus	16.93	21.77
OQU78676	Sorghum	nucleus	12.7	21.33
PGSC0003DMT400046351	Potato	nucleus	16.93	21.26
EES01669	Sorghum	nucleus	15.34	20.94
OQU82729	Sorghum	nucleus	12.43	20.7
EES01667	Sorghum	nucleus	14.29	20.45
OQU88981	Sorghum	plastid	14.81	20.36
PGSC0003DMT400084214	Potato	nucleus	17.72	20.24
EES15768	Sorghum	nucleus	17.72	20.06
Solyc05g050340.2.1	Tomato	nucleus	16.67	19.27
EES19695	Sorghum	nucleus	11.9	19.15
OQU82725	Sorghum	nucleus	16.67	18.86
EER99917	Sorghum	mitochondrion, nucleus	17.46	18.64
OQU77713	Sorghum	nucleus	18.52	18.52
EES03804	Sorghum	nucleus	15.87	18.02
EER94905	Sorghum	nucleus	15.34	17.68
EES01668	Sorghum	nucleus	16.93	16.98
EES09135	Sorghum	nucleus	16.14	16.9
Solyc05g050310.1.1	Tomato	cytosol, nucleus	2.38	15.25
CDX80415	Canola	nucleus	5.29	13.51

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8071350	UniProt:C5Z4F2	EnsemblPlants:EER87882	ProteinID:EER87882
ProteinID:EER87882.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR32096	PANTHER:PTHR32096:SF24
SMART:SM00774	EnsemblPlantsGene:SORBI_3010G045700	SUPFAM:SSF118290	UniParc:UPI0001A89019	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_002436515.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:3566332..3570889

Molecular Weight (calculated)

40528.0 Da

IEP (calculated)

6.573

GRAVY (calculated)

-0.617

Length

378 amino acids

Sequence
(BLAST)

001: MQDGAGAEAA GSSMQALLAL LADGEEQARQ LGEMMADDPW SRAEHYRGAA RRLQCTLGKA AAVARAIEAA APGSSRGTDD RSDSPRSADE SSGRTTTEVQ
101: ERQSMFKRRK GLPRWTAKFR VPDASLDATP DDGFSWRKYG QKDILGAKFP RGYYRCTYRT AQACGATKQV QRSDTDLCVF DVTYQGEHTC HQKQRASATV
201: AAAPAHGAGS QSPPPPPPLE QQQQQQDPSM MQLLRLGFKR VLKVETTPGL HDHGIGHRDS GPASAPAAPF SFPSASPFHL AGEATDNPAA AFSPPPASSY
301: FPAPHPVAVD GSFYDYEASP VALMRGAEPS ELGEVVTRAI TTGPAAFDYS SLFHHQAELD DPHLPFPPFG GPPHGPYQ

Best Arabidopsis Sequence Match ( AT4G23810.1 )
(BLAST)

001: MEGRDMLSWE QKTLLSELIN GFDAAKKLQA RLREAPSPSS SFSSPATAVA ETNEILVKQI VSSYERSLLL LNWSSSPSVQ LIPTPVTVVP VANPGSVPES
101: PASINGSPRS EEFADGGGSS ESHHRQDYIF NSKKRKMLPK WSEKVRISPE RGLEGPQDDV FSWRKYGQKD ILGAKFPRSY YRCTHRSTQN CWATKQVQRS
201: DGDATVFEVT YRGTHTCSQA ITRTPPLASP EKRQDTRVKP AITQKPKDIL ESLKSNLTVR TDGLDDGKDV FSFPDTPPFY NYGTINGEFG HVESSPIFDV
301: VDWFNPTVEI DTTFPAFLHE SIYY

Arabidopsis Description

WRKY53Probable WRKY transcription factor 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUP6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.