CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047523_P001	Maize	nucleus	75.61	76.31
TraesCS4B01G170100.1	Wheat	nucleus	50.3	54.64
TraesCS4D01G172200.1	Wheat	nucleus	49.39	54.18
HORVU4Hr1G050320.2	Barley	nucleus	48.78	53.69
TraesCS4A01G135000.1	Wheat	nucleus	39.33	50.79
Os03t0335200-01	Rice	nucleus	44.51	46.35
EER99917	Sorghum	mitochondrion, nucleus	37.2	34.46
EES15768	Sorghum	nucleus	29.57	29.04
OQU82729	Sorghum	nucleus	18.9	27.31
PGSC0003DMT400021625	Potato	nucleus	17.07	25.69
EER94940	Sorghum	nucleus	16.77	24.44
OQU78676	Sorghum	nucleus	16.77	24.44
PGSC0003DMT400070939	Potato	nucleus	16.46	24.22
KRH16921	Soybean	nucleus	16.77	22.92
KRH00435	Soybean	nucleus	20.43	22.41
KRH09521	Soybean	nucleus	17.68	21.89
GSMUA_Achr5P07490_001	Banana	endoplasmic reticulum	22.26	21.79
KRH64216	Soybean	nucleus	21.04	21.77
EES01669	Sorghum	nucleus	18.29	21.66
KRH21926	Soybean	nucleus	19.51	21.62
KRH21928	Soybean	nucleus	17.68	21.48
KRH53716	Soybean	nucleus	20.73	21.32
EES01666	Sorghum	nucleus	15.24	21.19
KRH40720	Soybean	nucleus	19.21	21.0
KRH21925	Soybean	nucleus	18.29	20.41
Solyc09g015770.2.1	Tomato	extracellular, nucleus	17.68	19.93
VIT_13s0067g03140.t01	Wine grape	nucleus	18.9	19.81
KRH16920	Soybean	nucleus	17.99	19.47
PGSC0003DMT400075091	Potato	nucleus	17.38	19.45
CDX72140	Canola	nucleus	16.16	19.2
CDY27218	Canola	nucleus	15.85	18.84
Bra007243.1-P	Field mustard	nucleus	15.85	18.84
KRH21927	Soybean	nucleus	17.07	18.67
OQU88981	Sorghum	plastid	15.55	18.55
EER96589	Sorghum	nucleus	17.38	18.39
AT3G56400.1	Thale cress	nucleus	16.16	18.03
EES18716	Sorghum	nucleus	14.94	18.01
EES19695	Sorghum	nucleus	12.8	17.87
EER96590	Sorghum	nucleus	17.68	17.68
CDX75992	Canola	nucleus	15.24	17.54
Bra014692.1-P	Field mustard	nucleus	15.24	17.54
KRH64882	Soybean	nucleus	12.5	17.45
EES01667	Sorghum	nucleus	14.02	17.42
PGSC0003DMT400053122	Potato	nucleus	14.63	17.33
CDY32013	Canola	nucleus	14.94	17.31
Solyc03g095770.2.1	Tomato	nucleus	14.33	17.22
CDY66845	Canola	nucleus	14.94	17.07
Bra003239.1-P	Field mustard	nucleus	14.63	16.96
CDX67645	Canola	nucleus	14.63	16.96
EES09135	Sorghum	nucleus	18.29	16.62
EES03804	Sorghum	nucleus	16.77	16.52
OQU82725	Sorghum	nucleus	16.77	16.47
KRH16918	Soybean	nucleus	16.46	16.41
Bra016974.1-P	Field mustard	nucleus	16.46	16.36
CDY14738	Canola	nucleus	16.46	16.36
CDY06967	Canola	nucleus	16.46	16.36
VIT_08s0058g01390.t01	Wine grape	nucleus	17.68	16.25
OQU80381	Sorghum	nucleus	16.77	16.18
CDY23883	Canola	nucleus	16.46	15.93
EES03370	Sorghum	nucleus	16.77	15.9
AT2G40750.1	Thale cress	nucleus	16.77	15.9
CDY22474	Canola	nucleus	16.16	15.59
CDY35441	Canola	nucleus	16.16	15.59
Bra000203.1-P	Field mustard	nucleus	16.16	15.59
CDX79972	Canola	nucleus	15.85	15.43
EER87882	Sorghum	nucleus	17.68	15.34
Bra004586.1-P	Field mustard	nucleus	15.85	15.34
OQU77713	Sorghum	nucleus	16.77	14.55
EES01668	Sorghum	nucleus	14.94	13.0

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8082339	UniProt:C5X0T7	EnsemblPlants:EER94905	ProteinID:EER94905
ProteinID:EER94905.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF5
SMART:SM00774	EnsemblPlantsGene:SORBI_3001G381300	SUPFAM:SSF118290	UniParc:UPI0001A82DF0	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_002467907.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:66930715..66931988

Molecular Weight (calculated)

33956.0 Da

IEP (calculated)

5.720

GRAVY (calculated)

-0.391

Length

328 amino acids

Sequence
(BLAST)

001: MASSGSDVPA ARAAVAVNDL IQARDGAARL RAFLLQLDDQ RAAWAQLQID GVLTKLSSAM SALDVSDAAG SDDGARPRPQ SGSSCGNKRK QSSSRRSQRP
101: SDKKITANLE DGHVWRKYGQ KEIQDSPYPR SYYRCTHKTD QGCSARRQVQ RCETDTSKYV VTYYGEHTCR DPSTIPLIDH AAGALAELDR ANNLISFGPS
201: GTSNDANAAA AASNAGASSS QYLQAMGGSA AADQLSTSWC TSDDVFSSSA GSFMQVDQLI GAVVGGSAGV VTSAAAPDRG VVLGGVASGG RGTASFPTSP
301: NSLGFVVGSL GSIGGGGEDD DDMFRLDP

Best Arabidopsis Sequence Match ( AT3G56400.1 )
(BLAST)

001: MDTNKAKKLK VMNQLVEGHD LTTQLQQLLS QPGSGLEDLV AKILVCFNNT ISVLDTFEPI SSSSSLAAVE GSQNASCDND GKFEDSGDSR KRLGPVKGKR
101: GCYKRKKRSE TCTIESTILE DAFSWRKYGQ KEILNAKFPR SYFRCTHKYT QGCKATKQVQ KVELEPKMFS ITYIGNHTCN TNAETPKSKT CDHHDEIFMD
201: SEDHKSPSLS TSMKEEDNPH RHHGSSTEND LSLVWPEMVF EEDYHHQASY VNGKTSTSID VLGSQDLMVF GGGGDFEFSE NEHFSIFSSC SNLS

Arabidopsis Description

WRKY70Probable WRKY transcription factor 70 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY00]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.