CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01666	Sorghum	nucleus	17.45	20.34
OQU78676	Sorghum	nucleus	15.64	19.11
EER96590	Sorghum	nucleus	22.55	18.9
OQU82725	Sorghum	nucleus	21.82	17.96
OQU80381	Sorghum	nucleus	22.18	17.94
EES01667	Sorghum	nucleus	16.73	17.42
OQU82729	Sorghum	nucleus	14.18	17.18
EER96589	Sorghum	nucleus	19.27	17.1
EES01669	Sorghum	nucleus	17.09	16.97
EES18716	Sorghum	nucleus	16.73	16.91
EES09135	Sorghum	nucleus	21.82	16.62
EES19695	Sorghum	nucleus	13.82	16.17
OQU77713	Sorghum	nucleus	22.18	16.14
EER94940	Sorghum	nucleus	13.09	16.0
EER94905	Sorghum	nucleus	18.55	15.55
EES03370	Sorghum	nucleus	19.27	15.32
EER87882	Sorghum	nucleus	20.36	14.81
EER99917	Sorghum	mitochondrion, nucleus	18.55	14.41
EES03804	Sorghum	nucleus	16.73	13.81
EES01668	Sorghum	nucleus	17.82	13.0
EES15768	Sorghum	nucleus	14.91	12.28
Os11t0116600-00	Rice	nucleus	3.27	5.08

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8061655	UniProt:A0A1W0W3R3	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EnsemblPlants:OQU88981
ProteinID:OQU88981	ProteinID:OQU88981.1	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF38
SMART:SM00774	EnsemblPlantsGene:SORBI_3002G128400	SUPFAM:SSF118290	UniParc:UPI0009DC9048	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:17755739..17757847

Molecular Weight (calculated)

29097.4 Da

IEP (calculated)

6.156

GRAVY (calculated)

-0.331

Length

275 amino acids

Sequence
(BLAST)

001: MAPVQSALAA TWTPSCRTSL IHCVKRSLLC GSAPVGSQRP PASPPTGAQP VPAAGDQQRQ GELLNGPVLQ NGVHDSYTWR KYGQKEILGA RFPRSYYKCG
101: RRPGCPAKKH VQQCDADPSK LEVTYLEAHT CDDPPPSSSH AVPDPTAGSD ALLVPPVPTV PFPSAQCYGG GRPSPPPLPP YQVPYAATTL GSNVLTLTAT
201: GVLLPSASYD PVPDVTDCTP SLEQEQDHDL LHIPSPACSQ SELLPMEAAK LSPHAHGLPL SLEHTLDCDF AVPEL

Best Arabidopsis Sequence Match ( AT2G40740.1 )
(BLAST)

001: MYSYKKISYQ MEEVMSMIFH GMKLVKSLES SLPEKPPESL LTSLDEIVKT FSDANERLKM LLEIKNSETA LNKTKPVIVS VANQMLMQME PGLMQEYWLR
101: YGGSTSSQGT EAMFQTQLMA VDGGGERNLT AAVERSGASG SSTPRQRRRK DEGEEQTVLV AALRTGNTDL PPDDNHTWRK YGQKEILGSR FPRAYYRCTH
201: QKLYNCPAKK QVQRLNDDPF TFRVTYRGSH TCYNSTAPTA SSATPSTIPI SSVTTGHSVD YGLAVVDMAD VMFGSGGVGT NMDFIFPKND PS

Arabidopsis Description

WRKY55WRKY DNA-binding protein 55 [Source:TAIR;Acc:AT2G40740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.