CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028962_P001	Maize	nucleus	89.78	94.39
Zm00001d021581_P001	Maize	cytosol, mitochondrion, nucleus	43.11	82.91
Os03t0321700-01	Rice	nucleus	74.67	80.0
TraesCS4B01G176700.1	Wheat	nucleus	70.67	77.18
TraesCS4D01G178400.1	Wheat	nucleus	69.78	76.21
HORVU4Hr1G051970.1	Barley	nucleus	42.22	76.0
TraesCS4A01G128100.1	Wheat	nucleus	69.33	75.73
HORVU4Hr1G052010.2	Barley	nucleus	69.33	75.73
OQU82729	Sorghum	nucleus	37.33	37.0
OQU78676	Sorghum	nucleus	36.89	36.89
EES01666	Sorghum	nucleus	20.89	19.92
EES01667	Sorghum	nucleus	20.44	17.42
EER94905	Sorghum	nucleus	24.44	16.77
EES19695	Sorghum	nucleus	16.44	15.74
EER99917	Sorghum	mitochondrion, nucleus	23.11	14.69
OQU82725	Sorghum	nucleus	21.33	14.37
OQU80381	Sorghum	nucleus	21.33	14.12
EES01669	Sorghum	nucleus	17.33	14.08
EES18716	Sorghum	nucleus	16.89	13.97
EES03804	Sorghum	nucleus	20.0	13.51
EER87882	Sorghum	nucleus	22.67	13.49
EES09135	Sorghum	nucleus	21.33	13.3
EER96589	Sorghum	nucleus	18.22	13.23
OQU88981	Sorghum	plastid	16.0	13.09
EER96590	Sorghum	nucleus	18.67	12.8
EES15768	Sorghum	nucleus	18.67	12.57
EES03370	Sorghum	nucleus	17.78	11.56
OQU77713	Sorghum	nucleus	18.67	11.11
EES01668	Sorghum	nucleus	17.78	10.61

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8083698	UniProt:C5X1S9	EnsemblPlants:EER94940	ProteinID:EER94940
ProteinID:EER94940.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF13
SMART:SM00774	EnsemblPlantsGene:SORBI_3001G389000	SUPFAM:SSF118290	UniParc:UPI0001A82E6B	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_002467942.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:67559616..67561361

Molecular Weight (calculated)

24203.9 Da

IEP (calculated)

8.574

GRAVY (calculated)

-0.656

Length

225 amino acids

Sequence
(BLAST)

001: MSPAPTSHHS QINSRKEKRM RKVDTFAPHN DGHQWRKYGE KKINNTNFPR YYYRCTYKDN MNCPATKQVQ QKDHSDPPLY AVTYYNEHSC NSAFLPLSPS
101: EFQLQTSSGK AVSICFDSSS GAAAPQEPPA TAAATNASGG GGSPSSSAAA VAAARRGTPP EISNPPVLRR SETYPWGAGA AGVVEQKPAS CSTECHDAFS
201: GAAGAVPEEV VDAGRFGSIR FFHFL

Best Arabidopsis Sequence Match ( AT2G46400.1 )
(BLAST)

001: MMMEEKLVIN ELELGKELAN RLMNNLKHTS SVDSNKTLIS DILRIYQNAI FMLSFNQDKN ILKRSLEIDG KDSKNVFKKR KVSEKNTEKV KVFVATEQEN
101: GSIDDGHCWR KYGQKEIHGS KNPRAYYRCT HRFTQDCLAV KQVQKSDTDP SLFEVKYLGN HTCNNITSPK TTTNFSVSLT NTNIFEGNRV HVTEQSEDMK
201: PTKSEEVMIS LEDLENKKNI FRTFSFSNHE IENGVWKSNL FLGNFVEDLS PATSGSAITS EVLSAPAAVE NSETADSYFS SLDNIIDFGQ DWLWS

Arabidopsis Description

WRKY46Probable WRKY transcription factor 46 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.