CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010616_P001	Maize	nucleus, plastid	81.7	84.21
TraesCS1A01G301200.1	Wheat	nucleus	63.83	51.72
TraesCS1B01G311000.1	Wheat	nucleus	62.98	51.39
TraesCS1D01G300900.1	Wheat	nucleus	63.4	51.38
HORVU1Hr1G069610.1	Barley	nucleus	62.13	50.52
TraesCS1A01G301000.1	Wheat	nucleus	57.45	47.04
TraesCS1B01G310900.1	Wheat	nucleus	57.02	46.85
HORVU0Hr1G023420.1	Barley	nucleus, plastid	62.13	46.79
TraesCS1D01G300600.1	Wheat	nucleus	57.02	46.69
TraesCS1D01G300400.1	Wheat	nucleus	56.6	46.34
HORVU1Hr1G069640.2	Barley	nucleus	55.74	44.71
Os05t0478700-00	Rice	nucleus	49.79	41.79
OQU82729	Sorghum	nucleus	20.0	20.7
OQU78676	Sorghum	nucleus	18.3	19.11
EES01666	Sorghum	nucleus	18.72	18.64
OQU82725	Sorghum	nucleus	25.11	17.66
EES01668	Sorghum	nucleus	27.23	16.98
EER94940	Sorghum	nucleus	15.74	16.44
EES01667	Sorghum	nucleus	18.3	16.29
EES03804	Sorghum	nucleus	22.98	16.22
EES18716	Sorghum	nucleus	18.72	16.18
EES09135	Sorghum	nucleus	24.26	15.79
EES01669	Sorghum	nucleus	18.3	15.52
OQU80381	Sorghum	nucleus	20.43	14.12
EER96589	Sorghum	nucleus	18.3	13.87
OQU88981	Sorghum	plastid	16.17	13.82
EER96590	Sorghum	nucleus	18.72	13.41
EES03370	Sorghum	nucleus	19.15	13.01
EER94905	Sorghum	nucleus	17.87	12.8
EES15768	Sorghum	nucleus	17.87	12.57
EER87882	Sorghum	nucleus	19.15	11.9
OQU77713	Sorghum	nucleus	18.72	11.64
EER99917	Sorghum	mitochondrion, nucleus	14.47	9.6

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8077007	UniProt:C5YZT1	EnsemblPlants:EES19695	ProteinID:EES19695
ProteinID:EES19695.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF24
SMART:SM00774	EnsemblPlantsGene:SORBI_3009G174300	SUPFAM:SSF118290	UniParc:UPI0001A88EE0	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_002441265.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:52963804..52966801

Molecular Weight (calculated)

26624.2 Da

IEP (calculated)

6.721

GRAVY (calculated)

-0.740

Length

235 amino acids

Sequence
(BLAST)

001: MTLSPPQPPP SSSPRHAAIQ ELRRGTQLAE LLRQQVELIP EPNRRQAAVV NVGEISMAME SSLSILQSEM EHPFVSEVMA APTAYSDGGS TSRERNGPVA
101: RTRRVRHRRG RDGAELPIKE ILTEAPENDH FHWRKYGEKN ILYAEYPRLY YKCGYSDDHK CPAKKYVQQQ SNTYPPLFLV TLINEHTCDT LFRDEPSSSS
201: SGSQVLDFTK ASLSPEEDSS MPVSMHRYSF SYDGY

Best Arabidopsis Sequence Match ( AT3G56400.1 )
(BLAST)

001: MDTNKAKKLK VMNQLVEGHD LTTQLQQLLS QPGSGLEDLV AKILVCFNNT ISVLDTFEPI SSSSSLAAVE GSQNASCDND GKFEDSGDSR KRLGPVKGKR
101: GCYKRKKRSE TCTIESTILE DAFSWRKYGQ KEILNAKFPR SYFRCTHKYT QGCKATKQVQ KVELEPKMFS ITYIGNHTCN TNAETPKSKT CDHHDEIFMD
201: SEDHKSPSLS TSMKEEDNPH RHHGSSTEND LSLVWPEMVF EEDYHHQASY VNGKTSTSID VLGSQDLMVF GGGGDFEFSE NEHFSIFSSC SNLS

Arabidopsis Description

WRKY70Probable WRKY transcription factor 70 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY00]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.