CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012507_P001	Maize	nucleus	68.17	73.01
TraesCS2A01G497400.1	Wheat	nucleus	36.07	37.78
TraesCS2D01G497600.1	Wheat	nucleus	36.07	37.57
TraesCS2D01G497700.1	Wheat	nucleus	35.54	37.12
TraesCS3A01G343500.1	Wheat	nucleus	32.89	34.54
HORVU3Hr1G080960.1	Barley	nucleus	32.1	33.61
TraesCS3D01G337300.1	Wheat	nucleus	32.36	32.53
EES19695	Sorghum	nucleus	16.98	27.23
EES01666	Sorghum	nucleus	13.79	22.03
OQU82725	Sorghum	nucleus	19.1	21.56
OQU78676	Sorghum	nucleus	12.47	20.89
EES18716	Sorghum	nucleus	14.32	19.85
OQU82729	Sorghum	nucleus	11.94	19.82
EES03804	Sorghum	nucleus	17.51	19.82
EES09135	Sorghum	nucleus	18.57	19.39
EES01667	Sorghum	nucleus	13.26	18.94
OQU80381	Sorghum	nucleus	16.98	18.82
EER96589	Sorghum	nucleus	15.12	18.39
OQU88981	Sorghum	plastid	13.0	17.82
EER94940	Sorghum	nucleus	10.61	17.78
EES01669	Sorghum	nucleus	13.0	17.69
EES03370	Sorghum	nucleus	15.65	17.05
EER87882	Sorghum	nucleus	16.98	16.93
EER96590	Sorghum	nucleus	14.59	16.77
OQU77713	Sorghum	nucleus	16.18	16.14
EES15768	Sorghum	nucleus	13.79	15.57
EER94905	Sorghum	nucleus	13.0	14.94
EER99917	Sorghum	mitochondrion, nucleus	13.26	14.12

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8057713	UniProt:C5XNA1	EnsemblPlants:EES01668	ProteinID:EES01668
ProteinID:EES01668.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF34
SMART:SM00774	EnsemblPlantsGene:SORBI_3003G337700	SUPFAM:SSF118290	UniParc:UPI0001A846ED	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_002456548.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:66081053..66083714

Molecular Weight (calculated)

40926.8 Da

IEP (calculated)

6.243

GRAVY (calculated)

-0.529

Length

377 amino acids

Sequence
(BLAST)

001: MAFDRDAKLF DVLANGYHLN TQLQALLVGR PLNSIGQQEA MAFSQELSRV FKLSMSMLNC NTVTRLRTAP EIRAGDSSGV IIQAVKDKRA RSDNGEVVTP
101: VKKSREDGVT RKEITASPYK DGYEWRKYGQ KNIQNCNYVR YYFRCSRDRR CEAKKKVQQQ DDGSGRGQPL SPPMFEVTYV NEHTCHLLRA IANDGDAARM
201: AASPRTTNRW SRVLGVVDTA RDDDHGGGVL FNDLSSSFPR IGGGGGDDAQ ENETIVSCLA TVISGGAAPS PPPWPPAAAE AGASDHPAAA SSYGVPPPMQ
301: ASGHSASVAE DGGGTTTTTT TMMIDDMDTD FCWDPSSFCA VGEGDQLMMD HRDMHVDVAR LADTVWPRHT SAGASWR

Best Arabidopsis Sequence Match ( AT5G01900.1 )
(BLAST)

001: MNSCQQKAME KLLHGHGCAN QLLIMDQTES DSSMEREDLA KSVLHCFSDA LSILIDTNDH QDDQSNNSSP QDSSPVLESS RKPLHKRGRK TSMAESSDYH
101: RHESSTPIYH DGFLWRKYGQ KQIKESEYQR SYYKCAYTKD QNCEAKKQVQ KIQHNPPLYS TTYFGQHICQ LHQAYATFPI DTSDFEEHEG SHMIRFGHPN
201: ISFSSSTSNL RQHQNHQDRI KDEYMKPVIA EDWSPSQWMS SEVALAVEAF EFNPFWTSHD LSS

Arabidopsis Description

WRKY62WRKY62 [Source:UniProtKB/TrEMBL;Acc:A0A178U8T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.