CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82729	Sorghum	nucleus	72.0	71.37
Os11t0116900-01	Rice	nucleus	67.11	67.41
Os12t0116400-00	Rice	nucleus	65.33	66.22
TraesCS4D01G119700.1	Wheat	nucleus	62.67	63.51
TraesCS4B01G121500.1	Wheat	nucleus	62.67	63.51
TraesCS4A01G193600.1	Wheat	nucleus	62.67	63.51
HORVU4Hr1G022970.2	Barley	nucleus, plastid	63.11	50.9
EER94940	Sorghum	nucleus	36.89	36.89
EES01666	Sorghum	nucleus	24.89	23.73
EES19695	Sorghum	nucleus	19.11	18.3
EES01667	Sorghum	nucleus	21.33	18.18
EER94905	Sorghum	nucleus	24.44	16.77
OQU80381	Sorghum	nucleus	24.0	15.88
OQU82725	Sorghum	nucleus	23.56	15.87
OQU88981	Sorghum	plastid	19.11	15.64
EER99917	Sorghum	mitochondrion, nucleus	24.44	15.54
EER96590	Sorghum	nucleus	22.22	15.24
EER96589	Sorghum	nucleus	20.0	14.52
EES09135	Sorghum	nucleus	23.11	14.4
EES15768	Sorghum	nucleus	21.33	14.37
EES03804	Sorghum	nucleus	20.44	13.81
EES01669	Sorghum	nucleus	16.89	13.72
EES18716	Sorghum	nucleus	16.44	13.6
EES03370	Sorghum	nucleus	20.0	13.01
OQU77713	Sorghum	nucleus	21.33	12.7
EER87882	Sorghum	nucleus	21.33	12.7
EES01668	Sorghum	nucleus	20.89	12.47

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A1B6PAY6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	ProteinID:KXG22924.1	EnsemblPlants:OQU78676
ProteinID:OQU78676	ProteinID:OQU78676.1	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF7
SMART:SM00774	EnsemblPlantsGene:SORBI_3008G029400	SUPFAM:SSF118290	UniParc:UPI0003C6F833	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:2625199..2632057

Molecular Weight (calculated)

25199.0 Da

IEP (calculated)

8.901

GRAVY (calculated)

-0.763

Length

225 amino acids

Sequence
(BLAST)

001: MALESVPTYL SDLGSHQAAR AQQQRIRKDE RIWTSDTYAP YDDGHQWRKY GEKKLSNSNF PRFYYRCTYK NDMKCPATKQ VQQKDTSDPP LFSVTYFNHH
101: TCSSISNPIG STRDVAAQSA SSKAVSICFS PHYSFRDEPQ SPIAHSFRGN QQPAERSAYA TSQFQWTAAS SPSPTSNDSP VKMEVDTFSG ASASSSSSSS
201: MGSLPRTRTL LPIGQSRCIE YFHFL

Best Arabidopsis Sequence Match ( AT2G46400.1 )
(BLAST)

001: MMMEEKLVIN ELELGKELAN RLMNNLKHTS SVDSNKTLIS DILRIYQNAI FMLSFNQDKN ILKRSLEIDG KDSKNVFKKR KVSEKNTEKV KVFVATEQEN
101: GSIDDGHCWR KYGQKEIHGS KNPRAYYRCT HRFTQDCLAV KQVQKSDTDP SLFEVKYLGN HTCNNITSPK TTTNFSVSLT NTNIFEGNRV HVTEQSEDMK
201: PTKSEEVMIS LEDLENKKNI FRTFSFSNHE IENGVWKSNL FLGNFVEDLS PATSGSAITS EVLSAPAAVE NSETADSYFS SLDNIIDFGQ DWLWS

Arabidopsis Description

WRKY46Probable WRKY transcription factor 46 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.