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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d037854_P001 Maize extracellular 80.42 74.33
HORVU6Hr1G013890.3 Barley nucleus 35.98 61.54
TraesCS1B01G243100.1 Wheat nucleus 48.41 50.97
Os05t0321900-01 Rice nucleus 56.35 49.77
TraesCS6B01G108000.1 Wheat nucleus 51.59 49.74
TraesCS6A01G080500.1 Wheat nucleus 50.79 49.1
TraesCS6D01G074200.1 Wheat nucleus 50.26 48.72
GSMUA_Achr8P01730_001 Banana nucleus 38.89 47.88
CDY06968 Canola nucleus 17.46 42.58
GSMUA_Achr9P04830_001 Banana nucleus 17.99 37.36
CDY13358 Canola nucleus 15.34 37.18
GSMUA_Achr6P32460_001 Banana nucleus 31.48 36.5
AT2G40740.3 Thale cress nucleus 27.51 34.55
Solyc06g048870.1.1 Tomato nucleus, vacuole 21.96 34.16
CDY71829 Canola nucleus 22.49 33.73
Bra016975.1-P Field mustard nucleus 25.13 33.45
CDY22473 Canola nucleus 25.93 32.67
Bra000202.1-P Field mustard nucleus 25.66 32.33
CDY35442 Canola nucleus 25.66 32.23
KRH64215 Soybean nucleus 27.78 31.16
KRH53718 Soybean nucleus 26.98 30.82
CDY59625 Canola nucleus 21.43 30.68
Bra014693.1-P Field mustard nucleus 21.16 30.3
CDX75991 Canola nucleus 20.9 29.92
PGSC0003DMT400022638 Potato nucleus 26.45 28.82
VIT_13s0067g03130.t01 Wine grape nucleus 27.51 28.57
OQU88981 Sorghum plastid 16.14 22.18
OQU80381 Sorghum nucleus 19.84 22.06
OQU78676 Sorghum nucleus 12.7 21.33
EES18716 Sorghum nucleus 15.08 20.96
EER96589 Sorghum nucleus 16.93 20.65
OQU82729 Sorghum nucleus 12.17 20.26
EES01669 Sorghum nucleus 14.81 20.22
EES01666 Sorghum nucleus 12.43 19.92
EER96590 Sorghum nucleus 16.4 18.9
EES03370 Sorghum nucleus 17.2 18.79
EES19695 Sorghum nucleus 11.64 18.72
EER94940 Sorghum nucleus 11.11 18.67
EES03804 Sorghum nucleus 16.4 18.62
EES15768 Sorghum nucleus 16.4 18.56
EER87882 Sorghum nucleus 18.52 18.52
OQU82725 Sorghum nucleus 16.14 18.26
EES01667 Sorghum nucleus 12.43 17.8
EER94905 Sorghum nucleus 14.55 16.77
EER99917 Sorghum mitochondrion, nucleus 15.61 16.67
EES09135 Sorghum nucleus 15.87 16.62
EES01668 Sorghum nucleus 16.14 16.18
Protein Annotations
MapMan:15.5.22Gene3D:2.20.25.80UniProt:A0A1Z5R1R1GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0043565InterPro:IPR003657InterPro:IPR036576EnsemblPlants:OQU77713ProteinID:OQU77713
ProteinID:OQU77713.1PFAM:PF03106PFscan:PS50811PANTHER:PTHR31282PANTHER:PTHR31282:SF38SMART:SM00774
EnsemblPlantsGene:SORBI_3009G092100SUPFAM:SSF118290UniParc:UPI000B425ADCInterPro:WRKY_domInterPro:WRKY_dom_sfSEG:seg
Description
hypothetical protein
Coordinates
chr9:+:20912936..20928927
Molecular Weight (calculated)
40834.7 Da
IEP (calculated)
6.884
GRAVY (calculated)
-0.556
Length
378 amino acids
Sequence
(BLAST)
001: MDDVLRQIDE GFRLARDLME ELPAAQNERT YLADRCHGIV QAYVAAIRML HPHGGTEDTA SSPPPLRPPH PPSPHFGGDG SGSGQHDHEI PQLDLLRPFL
101: GGAPSPSAPS SFPHNLGRLL AESSFINTTP VVDAFGAGTS SGGPVRRQAS SSRSSPPVQL RQQHRRRREN GERMTIMVPV QRTGNTDLPP DDGYTWRKYG
201: QKDILGSRFP RSYYRCTHKN YYGCEAKKKV QRLDDDPFTY EVTYCGNHTC LTSTTPLLTI PAGPATVAST AANMLNNSPT DSATALAAGH QDLFMPAAEH
301: PAQALSTAIQ LGISWMPSTL VGSSAPEGSS SQVNVPASGR DTAEYPVMDL ADAMFNSGSR GGSSMDAIFL ARHDRRDT
Best Arabidopsis Sequence Match ( AT2G40740.1 )
(BLAST)
001: MYSYKKISYQ MEEVMSMIFH GMKLVKSLES SLPEKPPESL LTSLDEIVKT FSDANERLKM LLEIKNSETA LNKTKPVIVS VANQMLMQME PGLMQEYWLR
101: YGGSTSSQGT EAMFQTQLMA VDGGGERNLT AAVERSGASG SSTPRQRRRK DEGEEQTVLV AALRTGNTDL PPDDNHTWRK YGQKEILGSR FPRAYYRCTH
201: QKLYNCPAKK QVQRLNDDPF TFRVTYRGSH TCYNSTAPTA SSATPSTIPI SSVTTGHSVD YGLAVVDMAD VMFGSGGVGT NMDFIFPKND PS
Arabidopsis Description
WRKY55WRKY DNA-binding protein 55 [Source:TAIR;Acc:AT2G40740]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.