Factsheet for Solyc06g048870.1.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022638	Potato	nucleus	88.48	61.96
CDY06968	Canola	nucleus	29.22	45.81
CDY13358	Canola	nucleus	27.57	42.95
GSMUA_Achr9P04830_001	Banana	nucleus	27.98	37.36
HORVU6Hr1G013890.3	Barley	nucleus	32.1	35.29
KRH64215	Soybean	nucleus	41.15	29.67
VIT_13s0067g03130.t01	Wine grape	nucleus	44.03	29.4
KRH53718	Soybean	nucleus	39.92	29.31
CDY71829	Canola	nucleus	30.04	28.97
Bra016975.1-P	Field mustard	nucleus	32.1	27.46
AT2G40740.3	Thale cress	nucleus	33.74	27.24
Bra000202.1-P	Field mustard	nucleus	32.92	26.67
CDY22473	Canola	nucleus	32.92	26.67
CDY35442	Canola	nucleus	32.92	26.58
CDX75991	Canola	nucleus	28.81	26.52
Bra014693.1-P	Field mustard	nucleus	28.81	26.52
CDY59625	Canola	nucleus	28.4	26.14
GSMUA_Achr8P01730_001	Banana	nucleus	31.69	25.08
GSMUA_Achr6P32460_001	Banana	nucleus	33.33	24.85
Solyc05g050300.1.1	Tomato	nucleus	18.11	22.56
OQU77713	Sorghum	nucleus	34.16	21.96
TraesCS6B01G108000.1	Wheat	nucleus	34.57	21.43
TraesCS6A01G080500.1	Wheat	nucleus	34.16	21.23
TraesCS6D01G074200.1	Wheat	nucleus	32.92	20.51
TraesCS1B01G243100.1	Wheat	nucleus	30.04	20.33
Os05t0321900-01	Rice	nucleus	35.39	20.09
Zm00001d037854_P001	Maize	extracellular	32.51	19.32
Solyc10g009550.2.1	Tomato	nucleus	21.4	17.93
Solyc01g095630.2.1	Tomato	nucleus	20.58	14.88
Solyc08g082110.2.1	Tomato	nucleus	20.58	14.75
Solyc05g050330.2.1	Tomato	nucleus	14.4	14.34
Solyc03g095770.2.1	Tomato	nucleus	15.64	13.92
Solyc08g008280.2.1	Tomato	nucleus	20.58	13.89
Solyc09g015770.2.1	Tomato	extracellular, nucleus	16.46	13.75
Solyc03g007380.1.1	Tomato	nucleus	19.75	13.6
Solyc05g050340.2.1	Tomato	nucleus	17.28	12.84
Solyc05g050310.1.1	Tomato	cytosol, nucleus	0.82	3.39

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4C5D3	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31282	PANTHER:PTHR31282:SF38	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc06g048870.1	EnsemblPlants:Solyc06g048870.1.1
UniParc:UPI000276673F	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:31845166..31848266

Molecular Weight (calculated)

26855.6 Da

IEP (calculated)

6.621

GRAVY (calculated)

-0.518

Length

243 amino acids

Sequence
(BLAST)

001: MFCSDDILIA VSFAHFFSFV CRTGDRDRRT LRVGAPRMGN LELPPEDGYT WRKYGQKEIL GSRFPRCTHQ KLYHCPAKKQ VQRLDNDPYV FEVTYRSQHT
101: CYMSATAPTV PPPSAEEMTH KTTTTLPPAP LLLPPPTSAS LSGHWLSMDI KPQGDQAGTS YTTTPFDIQR DFGHGSVGSL ASLVTAGVGD VGPSGGRYGR
201: EIDYQPVVDM ADAMFNSGSS SNTSMDKIFS SIDDKWDTAE KKE

Best Arabidopsis Sequence Match ( AT2G40740.1 )
(BLAST)

001: MYSYKKISYQ MEEVMSMIFH GMKLVKSLES SLPEKPPESL LTSLDEIVKT FSDANERLKM LLEIKNSETA LNKTKPVIVS VANQMLMQME PGLMQEYWLR
101: YGGSTSSQGT EAMFQTQLMA VDGGGERNLT AAVERSGASG SSTPRQRRRK DEGEEQTVLV AALRTGNTDL PPDDNHTWRK YGQKEILGSR FPRAYYRCTH
201: QKLYNCPAKK QVQRLNDDPF TFRVTYRGSH TCYNSTAPTA SSATPSTIPI SSVTTGHSVD YGLAVVDMAD VMFGSGGVGT NMDFIFPKND PS

Arabidopsis Description

WRKY55WRKY DNA-binding protein 55 [Source:TAIR;Acc:AT2G40740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.