Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75991 | Canola | nucleus | 93.18 | 93.18 |
| CDY13358 | Canola | nucleus | 36.74 | 62.18 |
| CDY06968 | Canola | nucleus | 27.27 | 46.45 |
| CDY71829 | Canola | nucleus | 42.05 | 44.05 |
| CDY22473 | Canola | nucleus | 48.86 | 43.0 |
| CDY35442 | Canola | nucleus | 47.73 | 41.86 |
| GSMUA_Achr9P04830_001 | Banana | nucleus | 19.7 | 28.57 |
| HORVU6Hr1G013890.3 | Barley | nucleus | 23.86 | 28.51 |
| Solyc06g048870.1.1 | Tomato | nucleus, vacuole | 26.14 | 28.4 |
| KRH64215 | Soybean | nucleus | 35.61 | 27.89 |
| VIT_13s0067g03130.t01 | Wine grape | nucleus | 37.88 | 27.47 |
| KRH53718 | Soybean | nucleus | 34.09 | 27.19 |
| GSMUA_Achr8P01730_001 | Banana | nucleus | 30.68 | 26.38 |
| PGSC0003DMT400022638 | Potato | nucleus | 32.95 | 25.07 |
| GSMUA_Achr6P32460_001 | Banana | nucleus | 28.79 | 23.31 |
| OQU77713 | Sorghum | nucleus | 30.68 | 21.43 |
| TraesCS1B01G243100.1 | Wheat | nucleus | 27.27 | 20.06 |
| CDX95699 | Canola | nucleus | 21.59 | 20.0 |
| CDX72140 | Canola | nucleus | 20.83 | 19.93 |
| CDX89127 | Canola | nucleus | 20.83 | 19.86 |
| CDX83367 | Canola | nucleus | 20.83 | 19.78 |
| TraesCS6A01G080500.1 | Wheat | nucleus | 29.17 | 19.69 |
| CDY27218 | Canola | nucleus | 20.45 | 19.57 |
| CDX67645 | Canola | nucleus | 20.83 | 19.43 |
| TraesCS6B01G108000.1 | Wheat | nucleus | 28.79 | 19.39 |
| CDY03518 | Canola | nucleus | 23.11 | 19.37 |
| CDY47621 | Canola | nucleus | 23.11 | 19.3 |
| TraesCS6D01G074200.1 | Wheat | nucleus | 28.41 | 19.23 |
| Os05t0321900-01 | Rice | nucleus | 31.06 | 19.16 |
| CDY42043 | Canola | nucleus | 21.21 | 19.11 |
| Zm00001d037854_P001 | Maize | extracellular | 29.55 | 19.07 |
| CDX94221 | Canola | nucleus | 23.11 | 19.0 |
| CDX75992 | Canola | nucleus | 20.45 | 18.95 |
| CDY66845 | Canola | nucleus | 20.45 | 18.82 |
| CDY10969 | Canola | nucleus | 22.73 | 18.58 |
| CDY32013 | Canola | nucleus | 19.7 | 18.37 |
| CDX80015 | Canola | nucleus | 20.45 | 18.24 |
| CDX80414 | Canola | nucleus | 21.59 | 18.21 |
| CDX88077 | Canola | nucleus | 21.59 | 18.21 |
| CDX87141 | Canola | nucleus | 21.21 | 17.95 |
| CDY19847 | Canola | nucleus | 20.83 | 17.63 |
| CDY14738 | Canola | nucleus | 20.83 | 16.67 |
| CDY65042 | Canola | nucleus | 20.83 | 16.67 |
| CDY06967 | Canola | nucleus | 20.45 | 16.36 |
| CDY25271 | Canola | nucleus | 20.45 | 16.31 |
| CDY22474 | Canola | nucleus | 20.83 | 16.18 |
| CDY35441 | Canola | nucleus | 20.83 | 16.18 |
| CDY23883 | Canola | nucleus | 19.32 | 15.04 |
| CDX79972 | Canola | nucleus | 18.94 | 14.84 |
| CDX80415 | Canola | nucleus | 6.06 | 10.81 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078J5N8 | UniProt:A0A078J5N8 | EnsemblPlants:CDY59625 | ProteinID:CDY59625 |
| ProteinID:CDY59625.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00027496001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31282 |
| PANTHER:PTHR31282:SF38 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0004EB3121 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g55610DBnaC04g55610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J5N8]
Coordinates
chrLK033789:-:27480..28967
Molecular Weight (calculated)
29780.2 Da
IEP (calculated)
6.248
GRAVY (calculated)
-0.555
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEIMSMIFS GINLVKELEF CISAQESPES LSTSLGSVST LFGDANERLK ILLARRNAYV LTQPEPKPVP MSDLDQMLMQ QIEYGLMQDY SLRDGVMQGV
101: RNIDSGPSCG FSTPRPRRRK KNEEEETVFV AAARMGNMDT PPDDNHTWRK YGQKDILGSK FPRAYYRCTH EKLYKCPAKK QVQRLDEDPY TFCVTYRSSH
201: TCHFFTTSPI PSTANTATTD GHYGSTVVNM AEALFGNLDS VVPFGEPYFN YRSLFHGRGG DGDT
101: RNIDSGPSCG FSTPRPRRRK KNEEEETVFV AAARMGNMDT PPDDNHTWRK YGQKDILGSK FPRAYYRCTH EKLYKCPAKK QVQRLDEDPY TFCVTYRSSH
201: TCHFFTTSPI PSTANTATTD GHYGSTVVNM AEALFGNLDS VVPFGEPYFN YRSLFHGRGG DGDT
001: MYSYKKISYQ MEEVMSMIFH GMKLVKSLES SLPEKPPESL LTSLDEIVKT FSDANERLKM LLEIKNSETA LNKTKPVIVS VANQMLMQME PGLMQEYWLR
101: YGGSTSSQGT EAMFQTQLMA VDGGGERNLT AAVERSGASG SSTPRQRRRK DEGEEQTVLV AALRTGNTDL PPDDNHTWRK YGQKEILGSR FPRAYYRCTH
201: QKLYNCPAKK QVQRLNDDPF TFRVTYRGSH TCYNSTAPTA SSATPSTIPI SSVTTGHSVD YGLAVVDMAD VMFGSGGVGT NMDFIFPKND PS
101: YGGSTSSQGT EAMFQTQLMA VDGGGERNLT AAVERSGASG SSTPRQRRRK DEGEEQTVLV AALRTGNTDL PPDDNHTWRK YGQKEILGSR FPRAYYRCTH
201: QKLYNCPAKK QVQRLNDDPF TFRVTYRGSH TCYNSTAPTA SSATPSTIPI SSVTTGHSVD YGLAVVDMAD VMFGSGGVGT NMDFIFPKND PS
Arabidopsis Description
WRKY55WRKY DNA-binding protein 55 [Source:TAIR;Acc:AT2G40740]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.