Factsheet for VIT_13s0067g03130.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06968	Canola	nucleus	19.78	46.45
Solyc06g048870.1.1	Tomato	nucleus, vacuole	29.4	44.03
CDY13358	Canola	nucleus	18.68	43.59
KRH53718	Soybean	nucleus	39.56	43.5
KRH64215	Soybean	nucleus	39.29	42.43
AT2G40740.3	Thale cress	nucleus	34.89	42.19
CDY22473	Canola	nucleus	34.34	41.67
Bra016975.1-P	Field mustard	nucleus	32.14	41.2
Bra000202.1-P	Field mustard	nucleus	33.79	41.0
PGSC0003DMT400022638	Potato	nucleus	39.01	40.92
CDY35442	Canola	nucleus	33.52	40.53
CDY71829	Canola	nucleus	27.75	40.08
CDY59625	Canola	nucleus	27.47	37.88
Bra014693.1-P	Field mustard	nucleus	27.2	37.5
CDX75991	Canola	nucleus	27.2	37.5
HORVU6Hr1G013890.3	Barley	nucleus	21.7	35.75
GSMUA_Achr8P01730_001	Banana	nucleus	27.47	32.57
GSMUA_Achr9P04830_001	Banana	nucleus	16.21	32.42
GSMUA_Achr6P32460_001	Banana	nucleus	25.27	28.22
OQU77713	Sorghum	nucleus	28.57	27.51
TraesCS6A01G080500.1	Wheat	nucleus	28.85	26.85
TraesCS1B01G243100.1	Wheat	nucleus	26.37	26.74
TraesCS6B01G108000.1	Wheat	nucleus	28.57	26.53
TraesCS6D01G074200.1	Wheat	nucleus	28.02	26.15
Os05t0321900-01	Rice	nucleus	30.22	25.7
Zm00001d037854_P001	Maize	extracellular	28.57	25.43
VIT_02s0025g01280.t01	Wine grape	nucleus	19.51	20.76
VIT_13s0067g03140.t01	Wine grape	nucleus	16.76	19.49
VIT_16s0050g02510.t01	Wine grape	nucleus	19.23	19.23
VIT_15s0046g01140.t01	Wine grape	nucleus	16.76	18.89
VIT_08s0058g01390.t01	Wine grape	nucleus	16.48	16.81

Protein Annotations

EntrezGene:100263918	wikigene:100263918	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CCB49780	ProteinID:CCB49780.1
UniProt:F6HC34	EMBL:FN595514	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100263918	wikigene:LOC100263918	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF38	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000198473B
ArrayExpress:VIT_13s0067g03130	EnsemblPlantsGene:VIT_13s0067g03130	EnsemblPlants:VIT_13s0067g03130.t01	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002275373
RefSeq:XP_002275373.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:1716836..1718877

Molecular Weight (calculated)

40290.3 Da

IEP (calculated)

6.357

GRAVY (calculated)

-0.729

Length

364 amino acids

Sequence
(BLAST)

001: MEETLSHIVR GCKLARELES NIPNLAKQPR MLAKSCDEIM KIFGTAKERL NAQDDHSAYP YMFAQASGME TSGEMQEWLK TSYLQALQAQ YGLTESKVGG
101: IEPVTLSGHP GFELGGRDRE GSARSTGSGG EFQAMEGSDS GNSNSQRLRR RKDDIRKRKE TVAAPRIGNT DIPPDDNFTW RKYGQKEILG SKYPRSYYRC
201: THQKLYNCPA KKQVQRLEHD PFMFDITYID DHTCHKSATA PSVPPPPPEV TPEMIQATTA QLPMGRWLSM ELKPTGEAAN AFVDHSQVQM HVDLGLGEGS
301: SSSMVGTGGS TAGPSMVRFG REAEYPVVDL ADTMFNSGSS SSNSMDFLFT HTEEKWEPAG DKKN

Best Arabidopsis Sequence Match ( AT2G40740.1 )
(BLAST)

001: MYSYKKISYQ MEEVMSMIFH GMKLVKSLES SLPEKPPESL LTSLDEIVKT FSDANERLKM LLEIKNSETA LNKTKPVIVS VANQMLMQME PGLMQEYWLR
101: YGGSTSSQGT EAMFQTQLMA VDGGGERNLT AAVERSGASG SSTPRQRRRK DEGEEQTVLV AALRTGNTDL PPDDNHTWRK YGQKEILGSR FPRAYYRCTH
201: QKLYNCPAKK QVQRLNDDPF TFRVTYRGSH TCYNSTAPTA SSATPSTIPI SSVTTGHSVD YGLAVVDMAD VMFGSGGVGT NMDFIFPKND PS

Arabidopsis Description

WRKY55WRKY DNA-binding protein 55 [Source:TAIR;Acc:AT2G40740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.