Factsheet for GSMUA_Achr6P32460_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P04830_001	Banana	nucleus	36.2	64.84
GSMUA_Achr8P01730_001	Banana	nucleus	38.65	41.04
CDY06968	Canola	nucleus	18.4	38.71
HORVU6Hr1G013890.3	Barley	nucleus	25.46	37.56
CDY13358	Canola	nucleus	16.87	35.26
Solyc06g048870.1.1	Tomato	nucleus, vacuole	24.85	33.33
OQU77713	Sorghum	nucleus	36.5	31.48
TraesCS6A01G080500.1	Wheat	nucleus	37.12	30.95
TraesCS1B01G243100.1	Wheat	nucleus	34.05	30.92
Bra016975.1-P	Field mustard	nucleus	26.07	29.93
TraesCS6B01G108000.1	Wheat	nucleus	35.89	29.85
AT2G40740.3	Thale cress	nucleus	27.3	29.57
Zm00001d037854_P001	Maize	extracellular	36.81	29.34
TraesCS6D01G074200.1	Wheat	nucleus	34.97	29.23
CDX75991	Canola	nucleus	23.62	29.17
Bra014693.1-P	Field mustard	nucleus	23.62	29.17
CDY71829	Canola	nucleus	22.39	28.97
CDY59625	Canola	nucleus	23.31	28.79
Bra000202.1-P	Field mustard	nucleus	26.07	28.33
KRH64215	Soybean	nucleus	29.14	28.19
CDY22473	Canola	nucleus	25.77	28.0
CDY35442	Canola	nucleus	25.77	27.91
KRH53718	Soybean	nucleus	27.91	27.49
PGSC0003DMT400022638	Potato	nucleus	29.14	27.38
Os05t0321900-01	Rice	nucleus	35.28	26.87
GSMUA_Achr3P15840_001	Banana	nucleus	19.94	26.1
VIT_13s0067g03130.t01	Wine grape	nucleus	28.22	25.27
GSMUA_Achr3P25080_001	Banana	nucleus	24.85	24.4
GSMUA_Achr8P25110_001	Banana	nucleus	15.95	23.42
GSMUA_Achr1P27980_001	Banana	nucleus	22.09	23.23
GSMUA_AchrUn_...	Banana	nucleus	20.25	22.37
GSMUA_Achr7P22020_001	Banana	extracellular, nucleus	15.03	21.59
GSMUA_Achr6P05710_001	Banana	nucleus	22.09	21.18
GSMUA_Achr10P...	Banana	extracellular, nucleus	19.94	20.97
GSMUA_Achr7P14140_001	Banana	nucleus	22.7	20.56
GSMUA_Achr4P15640_001	Banana	nucleus	21.47	20.06
GSMUA_Achr5P08580_001	Banana	nucleus	18.71	19.93
GSMUA_Achr6P25120_001	Banana	nucleus	13.19	19.37
GSMUA_Achr5P07490_001	Banana	endoplasmic reticulum	19.63	19.1

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr6G32460_001	EnsemblPlants:GSMUA_Achr6P32460_001	EnsemblPlants:GSMUA_Achr6T32460_001	InterPro:IPR003657	InterPro:IPR036576
UniProt:M0TC40	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF38	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI0002965AEB	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G32460_001]

Coordinates

chr6:+:31868182..31869576

Molecular Weight (calculated)

35166.1 Da

IEP (calculated)

7.087

GRAVY (calculated)

-0.648

Length

326 amino acids

Sequence
(BLAST)

001: MDDILSQVFD ACRLARELET SLRLSNVPTD PHYLLGSCEE IVGAFNEAIR RLHAGNLSSY PSQMLLGEAP GSRLDPGAGE GSSRGTGYMQ PRSGAERPLS
101: GRRADGSLPH RSPRTRSAIG ELIVTTRIAR MDDGTVTRRV PALRTGNMEM PPDDGYTWRK YGQKDILNSR SYYRCTHRSY YGCEAKKKVQ RLDDDPNTFE
201: VIYCGTHTCQ TSPTPILIPT LVPSAIGNNM NDNDNDDGGG GGHQQGASPQ SASIQLRNWL EGNPRNTGTL LIPRSGAGGS TSRQVGQQQG GRDIDGSVAE
301: LADAMFNSAS SGSSMDAIFS PRQGSL

Best Arabidopsis Sequence Match ( AT2G40740.1 )
(BLAST)

001: MYSYKKISYQ MEEVMSMIFH GMKLVKSLES SLPEKPPESL LTSLDEIVKT FSDANERLKM LLEIKNSETA LNKTKPVIVS VANQMLMQME PGLMQEYWLR
101: YGGSTSSQGT EAMFQTQLMA VDGGGERNLT AAVERSGASG SSTPRQRRRK DEGEEQTVLV AALRTGNTDL PPDDNHTWRK YGQKEILGSR FPRAYYRCTH
201: QKLYNCPAKK QVQRLNDDPF TFRVTYRGSH TCYNSTAPTA SSATPSTIPI SSVTTGHSVD YGLAVVDMAD VMFGSGGVGT NMDFIFPKND PS

Arabidopsis Description

WRKY55WRKY DNA-binding protein 55 [Source:TAIR;Acc:AT2G40740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.