Factsheet for GSMUA_Achr6P25120_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P08580_001	Banana	nucleus	50.9	36.93
GSMUA_Achr8P25110_001	Banana	nucleus	23.87	23.87
GSMUA_Achr9P04830_001	Banana	nucleus	13.96	17.03
EES01666	Sorghum	nucleus	16.67	15.68
GSMUA_Achr7P22020_001	Banana	extracellular, nucleus	15.77	15.42
HORVU3Hr1G080860.1	Barley	nucleus	17.57	15.23
Zm00001d012508_P001	Maize	mitochondrion	16.22	15.19
Zm00001d043066_P001	Maize	nucleus	16.22	15.0
TraesCS3B01G375200.1	Wheat	nucleus	17.12	14.9
GSMUA_Achr1P27980_001	Banana	nucleus	20.27	14.52
TraesCS3D01G337000.1	Wheat	nucleus	16.67	14.51
GSMUA_Achr3P15840_001	Banana	nucleus	16.22	14.46
TraesCS3A01G343000.1	Wheat	nucleus	16.67	14.23
GSMUA_Achr3P25080_001	Banana	nucleus	21.17	14.16
GSMUA_Achr10P...	Banana	extracellular, nucleus	19.37	13.87
GSMUA_AchrUn_...	Banana	nucleus	18.02	13.56
GSMUA_Achr6P05710_001	Banana	nucleus	20.72	13.53
GSMUA_Achr5P07490_001	Banana	endoplasmic reticulum	20.27	13.43
Os01t0820400-01	Rice	nucleus	15.77	13.21
GSMUA_Achr6P32460_001	Banana	nucleus	19.37	13.19
GSMUA_Achr4P15640_001	Banana	nucleus	19.37	12.32
GSMUA_Achr7P14140_001	Banana	nucleus	19.82	12.22
GSMUA_Achr8P01730_001	Banana	nucleus	14.41	10.42

Protein Annotations

Gene3D:2.20.25.80	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr6G25120_001	EnsemblPlants:GSMUA_Achr6P25120_001	EnsemblPlants:GSMUA_Achr6T25120_001	InterPro:IPR003657	InterPro:IPR036576
UniProt:M0TA08	PFAM:PF03106	PANTHER:PTHR31282	PANTHER:PTHR31282:SF17	SMART:SM00774	SUPFAM:SSF118290
UniParc:UPI000294B412	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G25120_001]

Coordinates

chr6:-:26183249..26184302

Molecular Weight (calculated)

25087.6 Da

IEP (calculated)

5.990

GRAVY (calculated)

-0.495

Length

222 amino acids

Sequence
(BLAST)

001: MEHSNLLVST STDLSHCYHH LEIKVINEAH ELTRQLRAVL LPSLPAGSLA DLAREILDKI IKSCSLAAFM LQSGGHGHQT SKQHGEGERP MLDGHKKSYH
101: RCIYHKDQDC PATKTVQRVD RDADPPEFIV VYNMQHRCRS SDRHIPFVME SAEASLVKNQ SRTDTPSDGD PQMTHLLLSD EISNISLTPE QWNLDNDLDP
201: VMSLFEFADA DPFYSSVLMN LR

Best Arabidopsis Sequence Match ( AT1G66550.2 )
(BLAST)

001: MVSNIDHKAM EALLRGQGCA NNLKILLENG EISSVSTEPL IHTILDSFSL ALSFMDSPNH PPYHESSSHN MASHMSRRSS KQKLCVAEGL VNYNHDSRTM
101: CPNDGFTWRK YGQKTIKASA HKRCYYRCTY AKDQNCNATK RVQKIKDNPP VYRTTYLGKH VCKAFAVHDD TYSSTMIRFD QVVPEPIMPQ LTTIDHQVIT
201: VEENSAEHIM NQECDINDYL VDDDPFWASQ FPPFPSSDTM FLENISAFD

Arabidopsis Description

WRKY67Probable WRKY transcription factor 67 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.