Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P14140_001 | Banana | nucleus | 41.61 | 35.83 |
| GSMUA_Achr3P15840_001 | Banana | nucleus | 26.45 | 32.93 |
| VIT_15s0046g01140.t01 | Wine grape | nucleus | 32.9 | 31.58 |
| GSMUA_Achr6P05710_001 | Banana | nucleus | 34.52 | 31.47 |
| KRH77637 | Soybean | nucleus | 29.35 | 28.26 |
| GSMUA_Achr3P25080_001 | Banana | nucleus | 30.0 | 28.01 |
| GSMUA_Achr1P27980_001 | Banana | nucleus | 27.42 | 27.42 |
| KRG97154 | Soybean | nucleus | 31.94 | 27.35 |
| KRH68901 | Soybean | nucleus | 31.94 | 27.35 |
| AT4G11070.1 | Thale cress | nucleus | 27.42 | 27.16 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.81 | 27.12 |
| VIT_02s0025g01280.t01 | Wine grape | nucleus | 29.68 | 26.9 |
| PGSC0003DMT400051194 | Potato | nucleus | 24.84 | 26.55 |
| KRH41300 | Soybean | nucleus | 30.65 | 26.46 |
| KRH60029 | Soybean | nucleus | 30.65 | 26.17 |
| PGSC0003DMT400014949 | Potato | nucleus | 30.32 | 26.11 |
| CDY65042 | Canola | nucleus | 27.74 | 26.06 |
| Bra019265.1-P | Field mustard | nucleus | 27.1 | 26.01 |
| CDY10969 | Canola | nucleus | 27.1 | 26.01 |
| Bra033158.1-P | Field mustard | nucleus | 27.74 | 25.98 |
| CDY25271 | Canola | nucleus | 27.74 | 25.98 |
| Solyc10g009550.2.1 | Tomato | nucleus | 24.19 | 25.86 |
| CDX94221 | Canola | nucleus | 26.77 | 25.86 |
| Solyc08g008280.2.1 | Tomato | nucleus | 30.0 | 25.83 |
| AT4G23810.1 | Thale cress | nucleus | 26.77 | 25.62 |
| CDY03518 | Canola | nucleus | 25.81 | 25.4 |
| CDY47621 | Canola | nucleus | 25.81 | 25.32 |
| Bra013732.1-P | Field mustard | nucleus | 25.81 | 25.32 |
| VIT_16s0050g02510.t01 | Wine grape | nucleus | 29.68 | 25.27 |
| Solyc08g082110.2.1 | Tomato | nucleus | 27.42 | 25.07 |
| CDY42043 | Canola | nucleus | 23.23 | 24.57 |
| PGSC0003DMT400031695 | Potato | nucleus | 26.77 | 24.48 |
| KRH06499 | Soybean | nucleus | 29.35 | 24.4 |
| KRH47935 | Soybean | nucleus | 29.03 | 24.39 |
| CDY19847 | Canola | nucleus | 24.19 | 24.04 |
| Bra004540.1-P | Field mustard | nucleus | 21.94 | 23.86 |
| CDX89127 | Canola | nucleus | 21.29 | 23.83 |
| Bra014426.1-P | Field mustard | nucleus | 21.29 | 23.83 |
| Bra026467.1-P | Field mustard | nucleus | 23.87 | 23.72 |
| CDX80015 | Canola | nucleus | 22.58 | 23.65 |
| GSMUA_Achr4P15640_001 | Banana | nucleus | 26.45 | 23.5 |
| Bra000423.1-P | Field mustard | nucleus | 21.29 | 23.49 |
| CDX87141 | Canola | nucleus | 23.55 | 23.4 |
| KRH64503 | Soybean | nucleus | 27.42 | 23.35 |
| Solyc01g095630.2.1 | Tomato | nucleus | 25.16 | 23.21 |
| CDX95699 | Canola | nucleus | 21.29 | 23.16 |
| Solyc05g050300.1.1 | Tomato | nucleus | 14.52 | 23.08 |
| AT2G46400.1 | Thale cress | nucleus | 21.94 | 23.05 |
| CDX83367 | Canola | nucleus | 20.65 | 23.02 |
| KRH53440 | Soybean | nucleus | 26.77 | 22.8 |
| PGSC0003DMT400000599 | Potato | nucleus | 25.16 | 22.54 |
| GSMUA_Achr9P04830_001 | Banana | nucleus | 13.23 | 22.53 |
| Solyc03g007380.1.1 | Tomato | nucleus | 25.48 | 22.38 |
| PGSC0003DMT400023502 | Potato | nucleus | 25.48 | 22.19 |
| AT5G24110.1 | Thale cress | nucleus | 21.29 | 21.78 |
| CDX80414 | Canola | nucleus | 21.94 | 21.73 |
| CDX88077 | Canola | nucleus | 21.61 | 21.41 |
| Bra009734.1-P | Field mustard | nucleus | 21.61 | 21.41 |
| GSMUA_Achr8P01730_001 | Banana | nucleus | 20.65 | 20.85 |
| PGSC0003DMT400046351 | Potato | nucleus | 20.0 | 20.6 |
| Solyc05g050330.2.1 | Tomato | nucleus | 16.13 | 20.49 |
| GSMUA_Achr5P07490_001 | Banana | endoplasmic reticulum | 21.94 | 20.3 |
| GSMUA_Achr7P22020_001 | Banana | extracellular, nucleus | 14.84 | 20.26 |
| PGSC0003DMT400084227 | Potato | nucleus | 19.03 | 20.07 |
| GSMUA_Achr6P32460_001 | Banana | nucleus | 20.97 | 19.94 |
| GSMUA_Achr6P25120_001 | Banana | nucleus | 13.87 | 19.37 |
| PGSC0003DMT400084214 | Potato | nucleus | 20.32 | 19.03 |
| GSMUA_Achr8P25110_001 | Banana | nucleus | 13.23 | 18.47 |
| Solyc05g050340.2.1 | Tomato | nucleus | 19.35 | 18.35 |
| GSMUA_Achr5P08580_001 | Banana | nucleus | 17.42 | 17.65 |
| Solyc05g050310.1.1 | Tomato | cytosol, nucleus | 2.9 | 15.25 |
| CDX80415 | Canola | nucleus | 5.48 | 11.49 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr10G21880_001 | EnsemblPlants:GSMUA_Achr10P21880_001 | EnsemblPlants:GSMUA_Achr10T21880_001 | InterPro:IPR003657 |
| InterPro:IPR036576 | UniProt:M0RKB3 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR32096 | PANTHER:PTHR32096:SF20 |
| SMART:SM00774 | SUPFAM:SSF118290 | SignalP:SignalP-noTM | UniParc:UPI000295FBE3 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G21880_001]
Coordinates
chr10:+:27267770..27271829
Molecular Weight (calculated)
34764.8 Da
IEP (calculated)
9.067
GRAVY (calculated)
-0.763
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSAWDLSFL LRLLAHAEEQ TRQLEANLGD ASAADHCRSL VQQISSDLKE AVSVARLMDF EGPQQPAWQG NAAVDLPRWS SEGLWSENSE TVLKEQERRE
101: MKTLPKWTIQ VQVSGSQAGG VPEDGYSWRK YGQKEILGTR HRRGYYRCTR SNSVGCLATK QVQRSDRDPC VFHVTYRGEH TCLDNLQARL HDEAPTILEA
201: RHHLQDQHFS SPFMSPPTSE SNYFAVSPCQ RSSYGGGTAD AAFKPPPHVE APTLSLRGRP NTLTTGGRER RPAPRGDFCY KNHKLQVKQL RKHGARGGGP
301: RNRTVPYAVI
101: MKTLPKWTIQ VQVSGSQAGG VPEDGYSWRK YGQKEILGTR HRRGYYRCTR SNSVGCLATK QVQRSDRDPC VFHVTYRGEH TCLDNLQARL HDEAPTILEA
201: RHHLQDQHFS SPFMSPPTSE SNYFAVSPCQ RSSYGGGTAD AAFKPPPHVE APTLSLRGRP NTLTTGGRER RPAPRGDFCY KNHKLQVKQL RKHGARGGGP
301: RNRTVPYAVI
001: MEMMNWERRS LLNELIHGLK AAKQLQAILM LNGSTTQHNP TIELAPDPLA HPGKVPGSPA SITGNPRSEE FFNVRSKEFN LSSKKRKMLP KWTEQVRISP
101: ERGLEGPHDD IFSWRKYGQK DILGAKFPRS YYRCTFRNTQ YCWATKQVQR SDGDPTIFEV TYRGTHTCSQ GIPLPEKRET KPKHTVAVNY QNLRASLTVR
201: TGGLGSEAFS FPVTSPLYTY ESINGGGTFY HHVGSSGPSD FTGLISTNTS TGSSPIFDVN FQFDPTAEIN TGFPTFFHNS I
101: ERGLEGPHDD IFSWRKYGQK DILGAKFPRS YYRCTFRNTQ YCWATKQVQR SDGDPTIFEV TYRGTHTCSQ GIPLPEKRET KPKHTVAVNY QNLRASLTVR
201: TGGLGSEAFS FPVTSPLYTY ESINGGGTFY HHVGSSGPSD FTGLISTNTS TGSSPIFDVN FQFDPTAEIN TGFPTFFHNS I
Arabidopsis Description
WRKY41Probable WRKY transcription factor 41 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0Y8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.