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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000214.1-P
Bra000647.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P
Bra037860.1-P
Bra039693.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G23810.1 Bra000214.1-P AT2G41090.1 17360592
AT4G23810.1 Bra000214.1-P AT2G41100.1 17360592
AT4G23810.1 Bra018296.1-P AT3G51920.1 17360592
AT4G23810.1 Bra033467.1-P AT3G51920.1 17360592
AT4G23810.1 Bra000647.1-P AT4G08500.1 17587183
AT4G23810.1 Bra037860.1-P AT4G08500.1 17587183
AT4G23810.1 Bra039693.1-P AT4G08500.1 17587183
AT4G23810.1 Bra039723.1-P AT4G14640.1 17360592
AT4G23810.1 Bra002368.1-P AT5G21274.1 17360592
AT4G23810.1 Bra006595.1-P AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX94221 Canola nucleus 90.71 91.28
Bra013732.1-P Field mustard nucleus 74.3 75.95
AT4G23810.1 Thale cress nucleus 75.54 75.31
Bra033158.1-P Field mustard nucleus 56.35 54.98
KRH41300 Soybean nucleus 44.58 40.11
KRH60029 Soybean nucleus 43.96 39.12
VIT_02s0025g01280.t01 Wine grape nucleus 40.56 38.3
PGSC0003DMT400014949 Potato nucleus 42.41 38.06
Solyc08g082110.2.1 Tomato nucleus 39.32 37.46
PGSC0003DMT400031695 Potato nucleus 39.32 37.46
Solyc08g008280.2.1 Tomato nucleus 41.49 37.22
KRH77637 Soybean nucleus 36.22 36.34
GSMUA_AchrUn_... Banana nucleus 30.96 33.9
Bra009734.1-P Field mustard nucleus 32.51 33.55
GSMUA_Achr3P15840_001 Banana nucleus 25.7 33.33
Bra026467.1-P Field mustard nucleus 32.2 33.33
GSMUA_Achr1P27980_001 Banana nucleus 31.58 32.9
HORVU3Hr1G059210.1 Barley nucleus 24.77 32.79
GSMUA_Achr3P25080_001 Banana nucleus 33.44 32.53
GSMUA_Achr7P14140_001 Banana nucleus 35.6 31.94
TraesCS3D01G238300.1 Wheat nucleus 28.48 31.62
TraesCS1B01G440700.1 Wheat nucleus 23.53 31.54
GSMUA_Achr6P05710_001 Banana nucleus 33.13 31.47
Bra014426.1-P Field mustard nucleus 26.93 31.41
TraesCS2D01G168600.1 Wheat nucleus 28.48 31.4
TraesCS1B01G440600.1 Wheat nucleus 22.91 31.09
TraesCS2B01G187500.1 Wheat nucleus 28.17 31.06
Bra004540.1-P Field mustard nucleus 27.24 30.88
Os11t0685700-00 Rice nucleus 18.27 30.73
TraesCS1D01G418500.1 Wheat nucleus 22.91 30.58
Os08t0386200-01 Rice nucleus 30.03 30.41
TraesCS1D01G418600.1 Wheat nucleus 23.22 30.36
HORVU5Hr1G034830.3 Barley nucleus 30.96 30.12
EER96589 Sorghum nucleus 28.79 30.0
HORVU1Hr1G090170.1 Barley nucleus 22.91 29.96
Os01t0656400-00 Rice nucleus 25.39 29.93
Bra000423.1-P Field mustard nucleus 26.01 29.89
HORVU3Hr1G059220.1 Barley nucleus 28.48 29.87
TraesCS1D01G418400.1 Wheat nucleus 23.53 29.8
Zm00001d020136_P001 Maize nucleus 27.86 29.8
TraesCS2A01G161500.1 Wheat nucleus 27.24 29.73
HORVU1Hr1G090110.1 Barley nucleus 23.22 29.64
Os05t0571200-01 Rice nucleus 25.39 29.6
HORVU1Hr1G090190.2 Barley nucleus 23.22 29.53
HORVU2Hr1G029430.2 Barley mitochondrion, nucleus 22.29 29.51
TraesCS5D01G190700.1 Wheat nucleus 30.96 29.33
TraesCS1D01G418000.1 Wheat nucleus 22.29 29.27
TraesCS5B01G183700.1 Wheat nucleus 30.65 29.2
TraesCS1A01G410700.1 Wheat nucleus 22.29 29.15
TraesCS1B01G440500.1 Wheat nucleus 23.22 28.74
TraesCS5B01G183800.1 Wheat nucleus 30.65 28.61
TraesCS1B01G440300.1 Wheat nucleus 21.67 28.57
HORVU0Hr1G012740.1 Barley nucleus 28.48 28.48
TraesCS1A01G410500.1 Wheat nucleus 22.29 28.46
Zm00001d050247_P001 Maize nucleus 28.17 28.44
Zm00001d020137_P001 Maize nucleus 28.48 28.4
EES18716 Sorghum nucleus 23.84 28.31
TraesCS5A01G185600.1 Wheat nucleus 30.03 28.28
TraesCS5D01G190800.1 Wheat nucleus 30.65 28.21
HORVU1Hr1G090130.4 Barley nucleus 22.6 28.08
EES03370 Sorghum nucleus 30.03 28.03
TraesCS1A01G410600.1 Wheat nucleus 20.12 27.9
Zm00001d032265_P001 Maize nucleus 28.48 27.63
TraesCS5A01G185700.1 Wheat nucleus 29.72 27.51
Zm00001d005622_P001 Maize nucleus 28.17 27.49
EER96590 Sorghum nucleus 27.86 27.44
OQU80381 Sorghum nucleus 28.79 27.35
Zm00001d011496_P002 Maize nucleus 27.55 27.22
GSMUA_Achr10P... Banana extracellular, nucleus 26.01 27.1
EER87882 Sorghum nucleus 31.27 26.72
TraesCS7D01G110600.1 Wheat nucleus 30.34 26.63
Zm00001d036244_P001 Maize nucleus 29.72 26.23
HORVU3Hr1G058670.1 Barley nucleus 20.12 26.1
Os09t0334500-01 Rice nucleus 29.1 26.04
TraesCS7B01G012600.1 Wheat nucleus 29.72 25.88
HORVU5Hr1G056130.2 Barley nucleus 31.27 25.77
Zm00001d045283_P001 Maize nucleus 31.58 25.76
TraesCS7A01G116000.1 Wheat nucleus 30.03 25.73
Zm00001d044010_P001 Maize nucleus 26.63 25.67
Os06t0158100-00 Rice nucleus 30.96 25.58
GSMUA_Achr4P15640_001 Banana nucleus 27.55 25.5
Bra016975.1-P Field mustard nucleus 20.74 23.59
Bra014693.1-P Field mustard nucleus 18.58 22.73
Zm00001d009619_P002 Maize nucleus 20.74 22.56
Bra000202.1-P Field mustard nucleus 20.74 22.33
HORVU0Hr1G012750.1 Barley nucleus 22.91 22.29
Bra007243.1-P Field mustard nucleus 18.89 22.1
Bra014692.1-P Field mustard nucleus 17.96 20.35
Bra003239.1-P Field mustard nucleus 17.65 20.14
Bra000203.1-P Field mustard nucleus 21.05 20.0
Bra004586.1-P Field mustard nucleus 19.81 18.88
Bra016974.1-P Field mustard nucleus 18.58 18.18
Protein Annotations
MapMan:15.5.22Gene3D:2.20.25.80EnsemblPlantsGene:Bra019265EnsemblPlants:Bra019265.1EnsemblPlants:Bra019265.1-PGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0043565InterPro:IPR003657InterPro:IPR036576
UniProt:M4DRX2PFAM:PF03106PFscan:PS50811PANTHER:PTHR32096PANTHER:PTHR32096:SF36SMART:SM00774
SUPFAM:SSF118290UniParc:UPI0002540F5FInterPro:WRKY_domInterPro:WRKY_dom_sfSEG:seg:
Description
AT4G23810 (E=3e-129) WRKY53, ATWRKY53 | WRKY53; DNA binding / protein binding / transcription activator/ transcription factor
Coordinates
chrA03:-:25364965..25366133
Molecular Weight (calculated)
36021.1 Da
IEP (calculated)
5.747
GRAVY (calculated)
-0.663
Length
323 amino acids
Sequence
(BLAST)
001: MEGKKDMLSW EQKTLVNELI FGLEAAKKLQ ARLGEPSSSP PSSSSRAAEM NEILMKQILS SYEKSLAIVN WSSSPPAQLI LKAGAVAPVT HSGVIPESPA
101: SINGSPRSED FLDGGGSSNT HRHDYILNSK KRKMLPKWTE KVRISPERGL EGPQQDDVYS WRKYGQKDIL GAKFPRSYYR CTHRSTQNCW ATKQVQRSDN
201: DPTVFEVTYR GTHTCSRASA AAPPPPASPE KQDTRTKPPI AQTPDELLES LKTSLTVRTE GLDDGEDVFS FPNTPPFYDY GTTNDYFGGL MESSPIFDVV
301: DWFNPTVEIN PEFPTFLPDS IYY
Best Arabidopsis Sequence Match ( AT4G23810.1 )
(BLAST)
001: MEGRDMLSWE QKTLLSELIN GFDAAKKLQA RLREAPSPSS SFSSPATAVA ETNEILVKQI VSSYERSLLL LNWSSSPSVQ LIPTPVTVVP VANPGSVPES
101: PASINGSPRS EEFADGGGSS ESHHRQDYIF NSKKRKMLPK WSEKVRISPE RGLEGPQDDV FSWRKYGQKD ILGAKFPRSY YRCTHRSTQN CWATKQVQRS
201: DGDATVFEVT YRGTHTCSQA ITRTPPLASP EKRQDTRVKP AITQKPKDIL ESLKSNLTVR TDGLDDGKDV FSFPDTPPFY NYGTINGEFG HVESSPIFDV
301: VDWFNPTVEI DTTFPAFLHE SIYY
Arabidopsis Description
WRKY53Probable WRKY transcription factor 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUP6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.