Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G410500.1 | Wheat | nucleus | 89.84 | 87.35 |
| TraesCS1B01G440300.1 | Wheat | nucleus | 86.59 | 86.94 |
| HORVU1Hr1G090110.1 | Barley | nucleus | 83.33 | 81.03 |
| TraesCS1D01G418600.1 | Wheat | nucleus | 73.58 | 73.28 |
| TraesCS1D01G418500.1 | Wheat | nucleus | 69.92 | 71.07 |
| TraesCS1D01G418400.1 | Wheat | nucleus | 73.58 | 70.98 |
| Os05t0571200-01 | Rice | nucleus | 53.66 | 47.65 |
| EES18716 | Sorghum | nucleus | 48.78 | 44.12 |
| Zm00001d009619_P002 | Maize | nucleus | 49.19 | 40.74 |
| TraesCS3D01G238300.1 | Wheat | nucleus | 41.87 | 35.4 |
| TraesCS2D01G168600.1 | Wheat | nucleus | 34.15 | 28.67 |
| GSMUA_Achr3P15840_001 | Banana | nucleus | 26.83 | 26.51 |
| GSMUA_Achr3P25080_001 | Banana | nucleus | 34.96 | 25.9 |
| VIT_15s0046g01140.t01 | Wine grape | nucleus | 33.74 | 25.7 |
| TraesCS5D01G190700.1 | Wheat | nucleus | 32.52 | 23.46 |
| CDY03518 | Canola | nucleus | 29.67 | 23.17 |
| Bra013732.1-P | Field mustard | nucleus | 29.67 | 23.1 |
| TraesCS5D01G190800.1 | Wheat | nucleus | 32.52 | 22.79 |
| CDY47621 | Canola | nucleus | 29.27 | 22.78 |
| Solyc10g009550.2.1 | Tomato | nucleus | 26.83 | 22.76 |
| CDX83367 | Canola | nucleus | 25.2 | 22.3 |
| Bra019265.1-P | Field mustard | nucleus | 29.27 | 22.29 |
| AT4G23810.1 | Thale cress | nucleus | 29.27 | 22.22 |
| CDX94221 | Canola | nucleus | 28.86 | 22.12 |
| Bra026467.1-P | Field mustard | nucleus | 28.05 | 22.12 |
| CDX87141 | Canola | nucleus | 28.05 | 22.12 |
| PGSC0003DMT400051194 | Potato | nucleus | 26.02 | 22.07 |
| Bra000423.1-P | Field mustard | nucleus | 25.2 | 22.06 |
| CDY10969 | Canola | nucleus | 28.86 | 21.98 |
| CDY19847 | Canola | nucleus | 27.64 | 21.79 |
| KRH77637 | Soybean | nucleus | 28.46 | 21.74 |
| AT4G11070.1 | Thale cress | nucleus | 27.64 | 21.73 |
| CDY65042 | Canola | nucleus | 28.86 | 21.52 |
| AT5G24110.1 | Thale cress | nucleus | 26.42 | 21.45 |
| Bra033158.1-P | Field mustard | nucleus | 28.86 | 21.45 |
| CDY25271 | Canola | nucleus | 28.86 | 21.45 |
| KRH41300 | Soybean | nucleus | 31.3 | 21.45 |
| VIT_02s0025g01280.t01 | Wine grape | nucleus | 29.67 | 21.34 |
| Solyc05g050330.2.1 | Tomato | nucleus | 21.14 | 21.31 |
| KRH60029 | Soybean | nucleus | 31.3 | 21.21 |
| VIT_16s0050g02510.t01 | Wine grape | nucleus | 31.3 | 21.15 |
| CDX80414 | Canola | nucleus | 26.83 | 21.09 |
| CDX95699 | Canola | nucleus | 24.39 | 21.05 |
| AT2G46400.1 | Thale cress | nucleus | 25.2 | 21.02 |
| CDY42043 | Canola | nucleus | 24.8 | 20.82 |
| CDX88077 | Canola | nucleus | 26.42 | 20.77 |
| Bra009734.1-P | Field mustard | nucleus | 26.42 | 20.77 |
| KRG97154 | Soybean | nucleus | 30.49 | 20.72 |
| KRH68901 | Soybean | nucleus | 30.49 | 20.72 |
| Bra004540.1-P | Field mustard | nucleus | 23.98 | 20.7 |
| Solyc03g007380.1.1 | Tomato | nucleus | 29.67 | 20.68 |
| CDX80015 | Canola | nucleus | 24.8 | 20.61 |
| Solyc01g095630.2.1 | Tomato | nucleus | 28.05 | 20.54 |
| TraesCS4D01G178400.1 | Wheat | nucleus | 17.07 | 20.39 |
| KRH53440 | Soybean | nucleus | 30.08 | 20.33 |
| KRH06499 | Soybean | nucleus | 30.49 | 20.11 |
| KRH64503 | Soybean | nucleus | 29.67 | 20.05 |
| KRH47935 | Soybean | nucleus | 30.08 | 20.05 |
| PGSC0003DMT400023502 | Potato | nucleus | 28.86 | 19.94 |
| PGSC0003DMT400000599 | Potato | nucleus | 28.05 | 19.94 |
| Solyc08g082110.2.1 | Tomato | nucleus | 27.24 | 19.76 |
| PGSC0003DMT400031695 | Potato | nucleus | 27.24 | 19.76 |
| TraesCS3D01G337500.1 | Wheat | nucleus | 21.54 | 19.63 |
| Solyc05g050300.1.1 | Tomato | nucleus | 15.45 | 19.49 |
| PGSC0003DMT400046351 | Potato | nucleus | 23.17 | 18.94 |
| TraesCS4D01G119700.1 | Wheat | nucleus | 17.07 | 18.92 |
| PGSC0003DMT400014949 | Potato | nucleus | 27.64 | 18.89 |
| TraesCS3D01G337600.1 | Wheat | nucleus | 20.73 | 18.82 |
| TraesCS7D01G110600.1 | Wheat | nucleus | 28.05 | 18.75 |
| Solyc08g008280.2.1 | Tomato | nucleus | 27.24 | 18.61 |
| TraesCS1D01G300700.1 | Wheat | nucleus | 22.76 | 18.48 |
| CDX89127 | Canola | nucleus | 20.73 | 18.41 |
| Bra014426.1-P | Field mustard | nucleus | 20.73 | 18.41 |
| PGSC0003DMT400084227 | Potato | nucleus | 21.95 | 18.37 |
| TraesCS7D01G345700.1 | Wheat | nucleus | 21.54 | 17.79 |
| TraesCS2D01G489700.1 | Wheat | nucleus | 20.73 | 17.41 |
| TraesCS1D01G300500.1 | Wheat | plastid | 21.54 | 17.26 |
| TraesCS1D01G300300.1 | Wheat | nucleus | 21.54 | 17.26 |
| TraesCS3D01G337000.1 | Wheat | nucleus | 17.89 | 17.25 |
| Solyc05g050340.2.1 | Tomato | nucleus | 22.76 | 17.13 |
| TraesCS2D01G042700.1 | Wheat | nucleus | 20.33 | 17.06 |
| TraesCS2D01G104600.1 | Wheat | nucleus | 23.17 | 16.96 |
| Solyc05g050310.1.1 | Tomato | cytosol, nucleus | 4.07 | 16.95 |
| PGSC0003DMT400084214 | Potato | nucleus | 22.36 | 16.62 |
| TraesCS2D01G104700.1 | Wheat | nucleus | 22.76 | 16.18 |
| TraesCS4D01G172200.1 | Wheat | nucleus | 19.51 | 16.05 |
| TraesCS3D01G337400.1 | Wheat | nucleus | 19.92 | 15.22 |
| TraesCS2D01G104500.1 | Wheat | nucleus | 21.54 | 15.1 |
| TraesCS6D01G074200.1 | Wheat | nucleus | 23.58 | 14.87 |
| TraesCS1D01G300400.1 | Wheat | nucleus | 17.07 | 14.63 |
| TraesCS3D01G337100.1 | Wheat | nucleus | 15.85 | 14.61 |
| TraesCS1D01G300600.1 | Wheat | nucleus | 16.67 | 14.29 |
| TraesCS1D01G300900.1 | Wheat | nucleus | 15.85 | 13.45 |
| TraesCS2D01G497600.1 | Wheat | nucleus | 18.7 | 12.71 |
| TraesCS2D01G497700.1 | Wheat | nucleus | 18.29 | 12.47 |
| TraesCS3D01G337300.1 | Wheat | nucleus | 17.89 | 11.73 |
| CDX80415 | Canola | nucleus | 6.5 | 10.81 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 |
| PANTHER:PTHR32096 | PANTHER:PTHR32096:SF20 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS1D01G418000 | EnsemblPlants:TraesCS1D01G418000.1 |
| InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1D:+:475863713..475865535
Molecular Weight (calculated)
25919.4 Da
IEP (calculated)
6.016
GRAVY (calculated)
-0.364
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDTAATLAT ELDGLLAMAR ELEVRLEGDQ GAPGTARELC AALAASVDRA MRLAGSSPRG GGDGEGNATG RASVSGRKAA AGKVRRQVRV ASVTDVGPLN
101: DGLSWRKYGQ KDILGAPYPR AYFRCTHRHS QGCQATKQVQ RPHADPLLFD VVYHGAHICA QAAVRPEQQS PPAVAPEGIQ WPVTPPSFPS PPAGTVGEYY
201: PSVCQLDGGY GYAAGGGLGA DMGFGSQQDE WFLNLSDVFQ PEVQNL
101: DGLSWRKYGQ KDILGAPYPR AYFRCTHRHS QGCQATKQVQ RPHADPLLFD VVYHGAHICA QAAVRPEQQS PPAVAPEGIQ WPVTPPSFPS PPAGTVGEYY
201: PSVCQLDGGY GYAAGGGLGA DMGFGSQQDE WFLNLSDVFQ PEVQNL
001: MEGRDMLSWE QKTLLSELIN GFDAAKKLQA RLREAPSPSS SFSSPATAVA ETNEILVKQI VSSYERSLLL LNWSSSPSVQ LIPTPVTVVP VANPGSVPES
101: PASINGSPRS EEFADGGGSS ESHHRQDYIF NSKKRKMLPK WSEKVRISPE RGLEGPQDDV FSWRKYGQKD ILGAKFPRSY YRCTHRSTQN CWATKQVQRS
201: DGDATVFEVT YRGTHTCSQA ITRTPPLASP EKRQDTRVKP AITQKPKDIL ESLKSNLTVR TDGLDDGKDV FSFPDTPPFY NYGTINGEFG HVESSPIFDV
301: VDWFNPTVEI DTTFPAFLHE SIYY
101: PASINGSPRS EEFADGGGSS ESHHRQDYIF NSKKRKMLPK WSEKVRISPE RGLEGPQDDV FSWRKYGQKD ILGAKFPRSY YRCTHRSTQN CWATKQVQRS
201: DGDATVFEVT YRGTHTCSQA ITRTPPLASP EKRQDTRVKP AITQKPKDIL ESLKSNLTVR TDGLDDGKDV FSFPDTPPFY NYGTINGEFG HVESSPIFDV
301: VDWFNPTVEI DTTFPAFLHE SIYY
Arabidopsis Description
WRKY53Probable WRKY transcription factor 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUP6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.