Factsheet for TraesCS4D01G038900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G184500.1
TraesCS1A01G410500.1
TraesCS1A01G410600.1
TraesCS1A01G410700.1
TraesCS1B01G192600.3
TraesCS1B01G440300.1
TraesCS1B01G440500.1
TraesCS1B01G440600.1
TraesCS1B01G440700.1
TraesCS1D01G192200.1
TraesCS1D01G418000.1
TraesCS1D01G418400.1
TraesCS1D01G418500.1
TraesCS1D01G418600.1
TraesCS2A01G161500.1
TraesCS2B01G187500.1
TraesCS2D01G168600.1
TraesCS3D01G238300.1
TraesCS5A01G185600.1
TraesCS5A01G185700.1
TraesCS5B01G183700.1
TraesCS5B01G183800.1
TraesCS5D01G190700.1
TraesCS5D01G190800.1
TraesCS7A01G116000.1
TraesCS7B01G012600.1
TraesCS7D01G110600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08480.1	TraesCS1A01G184500.1	AT4G01370.1	22643122
AT4G08480.1	TraesCS1B01G192600.3	AT4G01370.1	22643122
AT4G08480.1	TraesCS1D01G192200.1	AT4G01370.1	22643122
AT4G08500.1	TraesCS1A01G410500.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS1A01G410600.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS1A01G410700.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS1B01G440300.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS1B01G440500.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS1B01G440600.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS1B01G440700.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS1D01G418000.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS1D01G418400.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS1D01G418500.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS1D01G418600.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS2A01G161500.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS2B01G187500.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS2D01G168600.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS3D01G238300.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS5A01G185600.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS5A01G185700.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS5B01G183700.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS5B01G183800.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS5D01G190700.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS5D01G190800.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS7A01G116000.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS7B01G012600.1	AT4G23810.1	17587183
AT4G08500.1	TraesCS7D01G110600.1	AT4G23810.1	17587183

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G272500.1	Wheat	plastid	95.95	93.33
TraesCS4B01G041600.1	Wheat	plastid	96.11	92.64
HORVU4Hr1G006660.1	Barley	plastid	94.7	91.84
OQU91136	Sorghum	cytosol	49.69	85.98
Zm00001d033655_P003	Maize	nucleus, plastid	75.55	79.77
Zm00001d013477_P008	Maize	plastid	73.52	77.0
Os03t0703400-01	Rice	plasma membrane	78.04	76.61
GSMUA_Achr10P...	Banana	cytosol	55.3	67.62
GSMUA_Achr11P...	Banana	cytosol	56.07	66.06
PGSC0003DMT400067237	Potato	cytosol	29.59	65.29
GSMUA_Achr7P11850_001	Banana	mitochondrion, nucleus	53.89	62.45
GSMUA_Achr1P12210_001	Banana	mitochondrion	54.83	60.9
GSMUA_Achr2P07690_001	Banana	nucleus	54.21	60.0
Bra039693.1-P	Field mustard	cytosol	25.39	59.49
VIT_12s0142g00700.t01	Wine grape	cytosol	23.68	57.58
KRH10459	Soybean	cytosol	39.41	57.5
TraesCS4D01G217000.1	Wheat	plastid	51.71	56.08
CDY36607	Canola	cytosol	28.19	55.02
CDY24072	Canola	cytosol	29.59	53.37
KRH53173	Soybean	nucleus	43.93	50.81
VIT_18s0001g03960.t01	Wine grape	mitochondrion, nucleus	44.86	50.79
KRH16614	Soybean	mitochondrion	43.3	50.27
KRH64744	Soybean	nucleus	44.24	50.18
KRH16616	Soybean	nucleus	46.11	50.17
VIT_12s0034g00750.t01	Wine grape	cytosol	24.14	49.52
KRH18819	Soybean	nucleus	45.64	49.33
VIT_12s0034g00240.t01	Wine grape	nucleus	32.4	49.29
KRH42244	Soybean	cytosol	35.51	48.51
KRH58364	Soybean	cytosol, plastid	37.07	47.6
CDY18020	Canola	cytosol	5.76	47.44
TraesCS6D01G307100.1	Wheat	cytosol	38.01	46.65
CDY36198	Canola	cytosol	41.28	46.09
Bra000647.1-P	Field mustard	cytosol	38.63	45.84
CDY34000	Canola	cytosol	39.1	45.64
CDY69517	Canola	cytosol	38.63	45.17
Solyc07g053170.2.1	Tomato	cytosol	41.59	44.43
Bra037860.1-P	Field mustard	cytosol	41.28	44.24
CDX75154	Canola	cytosol	41.59	44.13
AT4G08500.1	Thale cress	cytosol, mitochondrion	40.97	43.26
PGSC0003DMT400061014	Potato	mitochondrion	44.39	42.79
Solyc01g104530.2.1	Tomato	nucleus	44.08	42.56
KRH10458	Soybean	cytosol	29.13	39.62
TraesCS7D01G398000.1	Wheat	cytosol	8.41	38.85
AT4G08470.1	Thale cress	cytosol	29.59	33.93
AT4G08480.1	Thale cress	cytosol, plastid	38.78	32.21
CDY18021	Canola	nucleus	20.25	31.71
TraesCS1D01G118900.1	Wheat	plastid	13.71	25.21
TraesCS4D01G101800.3	Wheat	cytosol, mitochondrion, nucleus	23.21	22.47
TraesCS3D01G256500.1	Wheat	plastid	14.8	22.14
TraesCS2D01G259300.3	Wheat	mitochondrion	24.3	21.08
TraesCS4D01G194700.1	Wheat	mitochondrion	15.26	20.37
TraesCS2D01G305500.1	Wheat	mitochondrion	21.81	20.32
TraesCS1D01G372700.1	Wheat	mitochondrion	14.33	19.87
TraesCS3D01G256600.1	Wheat	mitochondrion, plastid	14.17	19.87
TraesCS1D01G372900.1	Wheat	mitochondrion	14.64	19.79
TraesCS3D01G256400.1	Wheat	mitochondrion	14.33	19.74
TraesCS1D01G372500.1	Wheat	mitochondrion	13.86	19.39
TraesCS6D01G227300.1	Wheat	cytosol	26.32	19.25
TraesCS1D01G372600.1	Wheat	cytosol	14.02	18.79
TraesCS2D01G404700.1	Wheat	cytosol	26.01	18.79
TraesCS1D01G372400.1	Wheat	mitochondrion, plastid, vacuole	13.55	18.55
TraesCS5D01G206500.1	Wheat	cytosol	19.47	18.33
TraesCS1D01G372800.1	Wheat	cytosol	10.75	18.3
TraesCS2D01G498100.1	Wheat	cytosol	18.07	9.01

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.2.2	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24361
PANTHER:PTHR24361:SF404	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
EnsemblPlantsGene:TraesCS4D01G038900	EnsemblPlants:TraesCS4D01G038900.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:-:16655752..16661524

Molecular Weight (calculated)

68813.4 Da

IEP (calculated)

4.920

GRAVY (calculated)

-0.394

Length

642 amino acids

Sequence
(BLAST)

001: MDSGSSRRSG GGGSGRGSGS GSGSGSGSRG RSPRLERRNA AKHIDYEAGA AAAAAATTSV SASWSTSSSE RSPGTRPTRS LDLVARGGGA DFRINGSAEG
101: EVDELCRSLG LSGPEDFAIP VAAWEARKAR SSSDLLARPR PDPDSSAPPV DEPAPVVRTV SAPEAPWPAP HSFPDPIPEE SIHSSASTAT ATDSVEEPII
201: APPEESPKAT RVVAVAAPIV ALSLLSPRRG GGEVGIRGVR PPVLSPPPPI TGLAPPPARQ SSVAEIMSGS AWDIVNSFAP TEENSELRMA YGHVETSRMS
301: DTEEDNPEEN DEGLTGLEGE LKGWRVGETF EGFTGTSSLS TTNDDDASST NTEAVFVISP NGKFKRNIKS WMRGALLGSG SFGMVYEGIS DEGAFFAVKE
401: VSLLDQGSNA QQSILSLEQE IALLSQFEHE NIVQYYGTDK EESKLYIFIE LVTQGSLSSL YQKYKLRDSQ VSAYTRQILN GLVYLHERNV VHRDIKCANI
501: LVHANGSVKL ADFGLAKEMS KINMLRSCKG SVYWMAPEVV NPRKTYGPAA DMWSLGCTVL EMLTRQIPYP NVEWTNAFFM IGKGEQPPIP SYLSTEAQDF
601: IRQCVRVDPD ERPSASQLLA HPFVNRPLRA SFDSLSPPIN RP

Best Arabidopsis Sequence Match ( AT4G08500.1 )
(BLAST)

001: MDRILARMKK STGRRGGDKN ITPVRRLERR DAARNINYDA ASCSSSSAED LSVSTSSLMT RSLEFPEPTS FRIGGGVGEM DRIYRSLGVS GPDDLAISFD
101: AWEACKKRSS SDVVNRFKSF DLDKVRDQDL SEEGPSGVVV GSDSMNHKVQ GQDLSEAGPS GGIVTELSEI GNLITPVDRL VADGVVENRR VMERTPTIVK
201: SKGYLVPNNV VAVGVGVGGG IKGLRPPVLK PPPAMKRPPI DHRGSSWDFL THFAPSETVK RPSSSSSSSE DGCDEEEGKE EEAEAEEMGA RFIQLGDTAD
301: ETCSFTTNEG DSSSTVSNTS PIYPDGGAII TSWQKGQLLG RGSFGSVYEG ISGDGDFFAV KEVSLLDQGS QAQECIQQLE GEIKLLSQLQ HQNIVRYRGT
401: AKDGSNLYIF LELVTQGSLL KLYQRYQLRD SVVSLYTRQI LDGLKYLHDK GFIHRDIKCA NILVDANGAV KLADFGLAKV SKFNDIKSCK GTPFWMAPEV
501: INRKDSDGYG SPADIWSLGC TVLEMCTGQI PYSDLEPVQA LFRIGRGTLP EVPDTLSLDA RLFILKCLKV NPEERPTAAE LLNHPFVRRP LPSVGSGGSG
601: SASPLLRR

Arabidopsis Description

MEKK1Mitogen-activated protein kinase kinase kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39008]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.