Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G418400.1 | Wheat | nucleus | 90.04 | 92.16 |
| HORVU1Hr1G090130.4 | Barley | nucleus | 83.91 | 84.23 |
| TraesCS1B01G440700.1 | Wheat | nucleus | 73.18 | 79.25 |
| TraesCS1B01G440300.1 | Wheat | nucleus | 73.56 | 78.37 |
| TraesCS1B01G440600.1 | Wheat | nucleus | 68.2 | 74.79 |
| Os05t0571200-01 | Rice | nucleus | 52.49 | 49.46 |
| EES18716 | Sorghum | nucleus | 48.28 | 46.32 |
| Zm00001d009619_P002 | Maize | nucleus | 47.13 | 41.41 |
| TraesCS2B01G187500.1 | Wheat | nucleus | 30.65 | 27.3 |
| GSMUA_Achr3P15840_001 | Banana | nucleus | 25.29 | 26.51 |
| GSMUA_Achr3P25080_001 | Banana | nucleus | 32.57 | 25.6 |
| VIT_15s0046g01140.t01 | Wine grape | nucleus | 31.42 | 25.39 |
| Bra019265.1-P | Field mustard | nucleus | 28.74 | 23.22 |
| Solyc10g009550.2.1 | Tomato | nucleus | 25.67 | 23.1 |
| CDX94221 | Canola | nucleus | 28.35 | 23.05 |
| TraesCS5B01G183700.1 | Wheat | nucleus | 29.89 | 23.01 |
| CDY10969 | Canola | nucleus | 28.35 | 22.91 |
| CDY03518 | Canola | nucleus | 27.59 | 22.86 |
| Bra013732.1-P | Field mustard | nucleus | 27.59 | 22.78 |
| TraesCS5B01G183800.1 | Wheat | nucleus | 29.89 | 22.54 |
| AT4G23810.1 | Thale cress | nucleus | 27.97 | 22.53 |
| CDY47621 | Canola | nucleus | 27.2 | 22.47 |
| PGSC0003DMT400051194 | Potato | nucleus | 24.9 | 22.41 |
| KRH41300 | Soybean | nucleus | 30.65 | 22.28 |
| KRH77637 | Soybean | nucleus | 27.2 | 22.05 |
| AT4G11070.1 | Thale cress | nucleus | 26.44 | 22.04 |
| VIT_16s0050g02510.t01 | Wine grape | nucleus | 30.65 | 21.98 |
| Solyc08g082110.2.1 | Tomato | nucleus | 28.35 | 21.83 |
| PGSC0003DMT400031695 | Potato | nucleus | 28.35 | 21.83 |
| CDY65042 | Canola | nucleus | 27.59 | 21.82 |
| Bra026467.1-P | Field mustard | nucleus | 26.05 | 21.79 |
| CDX87141 | Canola | nucleus | 26.05 | 21.79 |
| Bra033158.1-P | Field mustard | nucleus | 27.59 | 21.75 |
| CDY25271 | Canola | nucleus | 27.59 | 21.75 |
| CDY19847 | Canola | nucleus | 25.67 | 21.47 |
| Solyc05g050330.2.1 | Tomato | nucleus | 19.92 | 21.31 |
| Solyc03g007380.1.1 | Tomato | nucleus | 28.74 | 21.25 |
| KRH60029 | Soybean | nucleus | 29.5 | 21.21 |
| AT2G46400.1 | Thale cress | nucleus | 23.75 | 21.02 |
| Bra000423.1-P | Field mustard | nucleus | 22.61 | 21.0 |
| CDX83367 | Canola | nucleus | 22.22 | 20.86 |
| CDX80414 | Canola | nucleus | 24.9 | 20.77 |
| VIT_02s0025g01280.t01 | Wine grape | nucleus | 27.2 | 20.76 |
| Solyc05g050300.1.1 | Tomato | nucleus | 15.33 | 20.51 |
| PGSC0003DMT400023502 | Potato | nucleus | 27.97 | 20.51 |
| AT5G24110.1 | Thale cress | nucleus | 23.75 | 20.46 |
| Bra009734.1-P | Field mustard | nucleus | 24.52 | 20.45 |
| CDX88077 | Canola | nucleus | 24.52 | 20.45 |
| CDY42043 | Canola | nucleus | 22.61 | 20.14 |
| KRH64503 | Soybean | nucleus | 27.97 | 20.05 |
| KRH53440 | Soybean | nucleus | 27.97 | 20.05 |
| KRH47935 | Soybean | nucleus | 28.35 | 20.05 |
| CDX95699 | Canola | nucleus | 21.84 | 20.0 |
| Bra004540.1-P | Field mustard | nucleus | 21.84 | 20.0 |
| CDX80015 | Canola | nucleus | 22.61 | 19.93 |
| KRH68901 | Soybean | nucleus | 27.59 | 19.89 |
| KRH06499 | Soybean | nucleus | 28.35 | 19.84 |
| TraesCS7B01G249700.1 | Wheat | nucleus | 20.69 | 19.71 |
| Solyc01g095630.2.1 | Tomato | nucleus | 25.29 | 19.64 |
| KRG97154 | Soybean | nucleus | 27.2 | 19.61 |
| PGSC0003DMT400000599 | Potato | nucleus | 25.67 | 19.36 |
| TraesCS3B01G375800.1 | Wheat | nucleus | 19.54 | 18.96 |
| TraesCS4B01G176700.1 | Wheat | nucleus | 14.94 | 18.93 |
| TraesCS4B01G121500.1 | Wheat | nucleus | 16.09 | 18.92 |
| TraesCS3B01G375200.1 | Wheat | nucleus | 18.39 | 18.82 |
| PGSC0003DMT400014949 | Potato | nucleus | 25.67 | 18.61 |
| PGSC0003DMT400046351 | Potato | nucleus | 21.46 | 18.6 |
| TraesCS2B01G056300.1 | Wheat | nucleus | 19.92 | 18.51 |
| CDX89127 | Canola | nucleus | 19.54 | 18.41 |
| Bra014426.1-P | Field mustard | nucleus | 19.54 | 18.41 |
| TraesCS2B01G056400.1 | Wheat | nucleus, plastid | 20.31 | 18.4 |
| TraesCS3B01G375700.1 | Wheat | nucleus | 19.16 | 18.38 |
| PGSC0003DMT400084227 | Potato | nucleus | 20.69 | 18.37 |
| Solyc08g008280.2.1 | Tomato | nucleus | 25.29 | 18.33 |
| TraesCS7B01G012600.1 | Wheat | nucleus | 26.05 | 18.33 |
| TraesCS3B01G375600.1 | Wheat | nucleus | 22.22 | 18.01 |
| TraesCS2B01G517400.1 | Wheat | nucleus | 20.31 | 17.85 |
| PGSC0003DMT400084214 | Potato | nucleus | 21.84 | 17.22 |
| Solyc05g050340.2.1 | Tomato | nucleus | 21.46 | 17.13 |
| TraesCS3B01G375300.1 | Wheat | nucleus | 17.24 | 16.98 |
| TraesCS4B01G170100.1 | Wheat | nucleus | 19.54 | 16.89 |
| TraesCS1B01G243100.1 | Wheat | nucleus | 22.22 | 16.16 |
| TraesCS2B01G121800.1 | Wheat | nucleus | 21.46 | 16.14 |
| TraesCS1B01G310900.1 | Wheat | nucleus | 17.24 | 15.73 |
| TraesCS1B01G311000.1 | Wheat | nucleus | 16.86 | 15.28 |
| Solyc05g050310.1.1 | Tomato | cytosol, nucleus | 3.45 | 15.25 |
| TraesCS2B01G121900.1 | Wheat | nucleus | 21.46 | 14.74 |
| TraesCS6B01G108000.1 | Wheat | nucleus | 20.31 | 13.52 |
| CDX80415 | Canola | nucleus | 6.13 | 10.81 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 |
| PFscan:PS50811 | PANTHER:PTHR32096 | PANTHER:PTHR32096:SF20 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS1B01G440500 |
| EnsemblPlants:TraesCS1B01G440500.1 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1B:+:662005087..662006735
Molecular Weight (calculated)
27324.0 Da
IEP (calculated)
5.348
GRAVY (calculated)
-0.336
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDTAATLAA ELDRLLAMAR ELEARVDGDQ GAPGAARELC AALAESVDRA MRLAGSSPRG GGGDGEGNAG TGRASVSGQV RGGRKAGANK VRTQVRVASV
101: TDAGPLSDGL SWRKYGQKDI LGATYPRAYF RCTHRHSQGC QATKQVQRAH ADPLLFDVVY LGAHTCAQAA AILAGPELQP PAAFGREYQQ SSPVAAPEGI
201: QWPVEPVTPP PFPSSPASCY TPGSPWCQPA GSYGYAAGGA DMEYDAEFVE MFLNLSEVQN L
101: TDAGPLSDGL SWRKYGQKDI LGATYPRAYF RCTHRHSQGC QATKQVQRAH ADPLLFDVVY LGAHTCAQAA AILAGPELQP PAAFGREYQQ SSPVAAPEGI
201: QWPVEPVTPP PFPSSPASCY TPGSPWCQPA GSYGYAAGGA DMEYDAEFVE MFLNLSEVQN L
001: MEMMNWERRS LLNELIHGLK AAKQLQAILM LNGSTTQHNP TIELAPDPLA HPGKVPGSPA SITGNPRSEE FFNVRSKEFN LSSKKRKMLP KWTEQVRISP
101: ERGLEGPHDD IFSWRKYGQK DILGAKFPRS YYRCTFRNTQ YCWATKQVQR SDGDPTIFEV TYRGTHTCSQ GIPLPEKRET KPKHTVAVNY QNLRASLTVR
201: TGGLGSEAFS FPVTSPLYTY ESINGGGTFY HHVGSSGPSD FTGLISTNTS TGSSPIFDVN FQFDPTAEIN TGFPTFFHNS I
101: ERGLEGPHDD IFSWRKYGQK DILGAKFPRS YYRCTFRNTQ YCWATKQVQR SDGDPTIFEV TYRGTHTCSQ GIPLPEKRET KPKHTVAVNY QNLRASLTVR
201: TGGLGSEAFS FPVTSPLYTY ESINGGGTFY HHVGSSGPSD FTGLISTNTS TGSSPIFDVN FQFDPTAEIN TGFPTFFHNS I
Arabidopsis Description
WRKY41Probable WRKY transcription factor 41 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0Y8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.