Factsheet for Solyc08g008280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc07g053170.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23810.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT4G23810.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT4G23810.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT4G23810.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT4G23810.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT4G23810.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT4G23810.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT4G23810.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT4G23810.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT4G23810.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT4G23810.1	Solyc07g053170.2.1	AT4G08500.1	17587183
AT4G23810.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT4G23810.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT4G23810.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT4G23810.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT4G23810.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT4G23810.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT4G23810.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014949	Potato	nucleus	96.11	96.11
Solyc08g082110.2.1	Tomato	nucleus	59.17	62.83
VIT_02s0025g01280.t01	Wine grape	nucleus	45.56	47.95
KRH41300	Soybean	nucleus	46.67	46.8
KRH60029	Soybean	nucleus	46.11	45.73
KRH77637	Soybean	nucleus	40.56	45.34
AT4G11070.1	Thale cress	nucleus	36.94	42.49
CDX94221	Canola	nucleus	37.5	42.06
CDY65042	Canola	nucleus	38.33	41.82
CDY10969	Canola	nucleus	37.5	41.8
CDY03518	Canola	nucleus	36.39	41.59
Bra019265.1-P	Field mustard	nucleus	37.22	41.49
Bra013732.1-P	Field mustard	nucleus	36.39	41.46
CDY47621	Canola	nucleus	36.11	41.14
CDY25271	Canola	nucleus	37.78	41.09
Bra033158.1-P	Field mustard	nucleus	37.78	41.09
AT4G23810.1	Thale cress	nucleus	36.67	40.74
GSMUA_Achr7P14140_001	Banana	nucleus	39.44	39.44
GSMUA_Achr3P15840_001	Banana	nucleus	26.11	37.75
Solyc10g009550.2.1	Tomato	nucleus	29.17	36.21
GSMUA_Achr3P25080_001	Banana	nucleus	32.22	34.94
GSMUA_Achr1P27980_001	Banana	nucleus	30.0	34.84
Os11t0685700-00	Rice	nucleus	18.33	34.38
TraesCS2B01G187500.1	Wheat	nucleus	27.78	34.13
TraesCS2D01G168600.1	Wheat	nucleus	27.5	33.79
GSMUA_Achr6P05710_001	Banana	nucleus	31.67	33.53
TraesCS2A01G161500.1	Wheat	nucleus	27.22	33.11
TraesCS3D01G238300.1	Wheat	nucleus	26.67	32.99
Solyc01g095630.2.1	Tomato	nucleus	30.56	32.74
GSMUA_AchrUn_...	Banana	nucleus	26.39	32.2
Os01t0656400-00	Rice	nucleus	24.44	32.12
Os08t0386200-01	Rice	nucleus	28.33	31.97
HORVU2Hr1G029430.2	Barley	mitochondrion, nucleus	21.67	31.97
HORVU5Hr1G034830.3	Barley	nucleus	29.44	31.93
HORVU3Hr1G059220.1	Barley	nucleus	26.94	31.49
Zm00001d050247_P001	Maize	nucleus	27.78	31.25
TraesCS5B01G183700.1	Wheat	nucleus	29.17	30.97
HORVU3Hr1G058670.1	Barley	nucleus	21.39	30.92
OQU80381	Sorghum	nucleus	29.17	30.88
Os05t0571200-01	Rice	nucleus	23.61	30.69
Solyc05g050310.1.1	Tomato	cytosol, nucleus	5.0	30.51
TraesCS5D01G190700.1	Wheat	nucleus	28.89	30.5
Zm00001d032265_P001	Maize	nucleus	28.06	30.33
HORVU3Hr1G059210.1	Barley	nucleus	20.56	30.33
TraesCS5A01G185600.1	Wheat	nucleus	28.89	30.32
Zm00001d020136_P001	Maize	nucleus	25.28	30.13
EER96589	Sorghum	nucleus	25.83	30.0
GSMUA_Achr10P...	Banana	extracellular, nucleus	25.83	30.0
EES03370	Sorghum	nucleus	28.33	29.48
Solyc03g007380.1.1	Tomato	nucleus	28.89	29.46
TraesCS1B01G440600.1	Wheat	nucleus	19.44	29.41
Zm00001d011496_P002	Maize	nucleus	26.67	29.36
TraesCS1B01G440700.1	Wheat	nucleus	19.44	29.05
EES18716	Sorghum	nucleus	21.94	29.04
Zm00001d005622_P001	Maize	nucleus	26.67	29.0
TraesCS5A01G185700.1	Wheat	nucleus	28.06	28.94
TraesCS1D01G418500.1	Wheat	nucleus	19.44	28.93
TraesCS5B01G183800.1	Wheat	nucleus	27.78	28.9
TraesCS5D01G190800.1	Wheat	nucleus	28.06	28.77
TraesCS1D01G418600.1	Wheat	nucleus	19.44	28.34
HORVU1Hr1G090170.1	Barley	nucleus	19.17	27.94
TraesCS1A01G410700.1	Wheat	nucleus	19.17	27.94
EER87882	Sorghum	nucleus	29.17	27.78
Zm00001d020137_P001	Maize	nucleus	25.0	27.78
EER96590	Sorghum	nucleus	25.28	27.74
Os09t0334500-01	Rice	nucleus	27.5	27.42
TraesCS1D01G418000.1	Wheat	nucleus	18.61	27.24
Solyc05g050300.1.1	Tomato	nucleus	14.72	27.18
HORVU1Hr1G090190.2	Barley	nucleus	19.17	27.17
Zm00001d044010_P001	Maize	nucleus	25.28	27.16
HORVU1Hr1G090110.1	Barley	nucleus	18.89	26.88
TraesCS1A01G410500.1	Wheat	nucleus	18.89	26.88
Zm00001d036244_P001	Maize	nucleus	27.22	26.78
TraesCS1D01G418400.1	Wheat	nucleus	18.89	26.67
Solyc05g050330.2.1	Tomato	nucleus	18.06	26.64
TraesCS1B01G440300.1	Wheat	nucleus	18.06	26.53
TraesCS7B01G012600.1	Wheat	nucleus	27.22	26.42
TraesCS7D01G110600.1	Wheat	nucleus	26.94	26.36
Zm00001d045283_P001	Maize	nucleus	28.89	26.26
TraesCS1B01G440500.1	Wheat	nucleus	18.33	25.29
HORVU5Hr1G056130.2	Barley	nucleus	27.5	25.26
GSMUA_Achr4P15640_001	Banana	nucleus	24.44	25.21
TraesCS7A01G116000.1	Wheat	nucleus	26.39	25.2
Os06t0158100-00	Rice	nucleus	27.22	25.06
HORVU0Hr1G012750.1	Barley	nucleus	22.78	24.7
HORVU1Hr1G090130.4	Barley	nucleus	17.78	24.62
HORVU0Hr1G012740.1	Barley	nucleus	21.94	24.46
Zm00001d009619_P002	Maize	nucleus	19.44	23.57
TraesCS1A01G410600.1	Wheat	nucleus	14.72	22.75
Solyc05g050340.2.1	Tomato	nucleus	20.56	22.63
Solyc09g015770.2.1	Tomato	extracellular, nucleus	18.06	22.34
Solyc03g095770.2.1	Tomato	nucleus	16.67	21.98
Solyc06g048870.1.1	Tomato	nucleus, vacuole	13.89	20.58

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4CIW2	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR32096	PANTHER:PTHR32096:SF36	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc08g008280.2	EnsemblPlants:Solyc08g008280.2.1
UniParc:UPI000276AC6B	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	:	:	:

Description

No Description!

Coordinates

chr8:-:2704613..2706561

Molecular Weight (calculated)

40710.5 Da

IEP (calculated)

5.777

GRAVY (calculated)

-0.819

Length

360 amino acids

Sequence
(BLAST)

001: MDCASNWEYK TLINELTQGI EHTKQLREHF HSTASTFENQ ELLLQKILSS YEQSLLILNW GGSTVQSPPD LPPSTGSIEY SASVDGSPKS DDKKRSDQDH
101: HALINISKKR KSQPTWTEQV KVSAESGFEG PTDDGYSWRK YGQKDILRAK YPRSYYRCTY RHMQNCWATK HVQRSDDDPT VFDITYRGSH NCHHATYSAP
201: QPTSPEKQEF ENQAVYPTGQ QYSNQVLMNL RANLRVNTND LDENDPAACH FSFVPTFSSG MTDDNRHFQI SHVDDNLIGS GYSPSFVSPT TPESNYFSVS
301: TSSQMNGYGM VHNLHHSESD LTDIFSANTS TTSSPIVGDF SLDHLELDPN FPFGNPKFFS

Best Arabidopsis Sequence Match ( AT4G23810.1 )
(BLAST)

001: MEGRDMLSWE QKTLLSELIN GFDAAKKLQA RLREAPSPSS SFSSPATAVA ETNEILVKQI VSSYERSLLL LNWSSSPSVQ LIPTPVTVVP VANPGSVPES
101: PASINGSPRS EEFADGGGSS ESHHRQDYIF NSKKRKMLPK WSEKVRISPE RGLEGPQDDV FSWRKYGQKD ILGAKFPRSY YRCTHRSTQN CWATKQVQRS
201: DGDATVFEVT YRGTHTCSQA ITRTPPLASP EKRQDTRVKP AITQKPKDIL ESLKSNLTVR TDGLDDGKDV FSFPDTPPFY NYGTINGEFG HVESSPIFDV
301: VDWFNPTVEI DTTFPAFLHE SIYY

Arabidopsis Description

WRKY53Probable WRKY transcription factor 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUP6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.