Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P15840_001 | Banana | nucleus | 24.64 | 34.54 |
| GSMUA_Achr3P25080_001 | Banana | nucleus | 32.66 | 34.34 |
| GSMUA_Achr1P27980_001 | Banana | nucleus | 28.37 | 31.94 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.65 | 31.53 |
| Solyc05g050310.1.1 | Tomato | cytosol, nucleus | 5.16 | 30.51 |
| AT4G11070.1 | Thale cress | nucleus | 26.93 | 30.03 |
| GSMUA_Achr6P05710_001 | Banana | nucleus | 28.94 | 29.71 |
| VIT_15s0046g01140.t01 | Wine grape | nucleus | 26.07 | 28.17 |
| GSMUA_Achr7P14140_001 | Banana | nucleus | 28.94 | 28.06 |
| CDX94221 | Canola | nucleus | 25.79 | 28.04 |
| Solyc10g009550.2.1 | Tomato | nucleus | 23.21 | 27.93 |
| CDY65042 | Canola | nucleus | 26.36 | 27.88 |
| AT4G23810.1 | Thale cress | nucleus | 25.79 | 27.78 |
| CDY03518 | Canola | nucleus | 24.93 | 27.62 |
| Bra019265.1-P | Field mustard | nucleus | 25.5 | 27.55 |
| PGSC0003DMT400051194 | Potato | nucleus | 22.64 | 27.24 |
| CDY47621 | Canola | nucleus | 24.64 | 27.22 |
| Bra013732.1-P | Field mustard | nucleus | 24.64 | 27.22 |
| CDY25271 | Canola | nucleus | 25.79 | 27.19 |
| Bra033158.1-P | Field mustard | nucleus | 25.79 | 27.19 |
| CDY10969 | Canola | nucleus | 24.93 | 26.93 |
| VIT_02s0025g01280.t01 | Wine grape | nucleus | 26.07 | 26.61 |
| CDY19847 | Canola | nucleus | 23.78 | 26.6 |
| GSMUA_Achr10P... | Banana | extracellular, nucleus | 23.5 | 26.45 |
| CDX95699 | Canola | nucleus | 21.49 | 26.32 |
| CDX87141 | Canola | nucleus | 23.5 | 26.28 |
| Bra026467.1-P | Field mustard | nucleus | 23.5 | 26.28 |
| KRH41300 | Soybean | nucleus | 26.93 | 26.18 |
| KRH77637 | Soybean | nucleus | 24.07 | 26.09 |
| KRH47935 | Soybean | nucleus | 27.51 | 26.02 |
| PGSC0003DMT400031695 | Potato | nucleus | 25.21 | 25.96 |
| VIT_16s0050g02510.t01 | Wine grape | nucleus | 26.93 | 25.82 |
| GSMUA_Achr9P04830_001 | Banana | nucleus | 13.47 | 25.82 |
| AT5G24110.1 | Thale cress | nucleus | 22.35 | 25.74 |
| Solyc08g082110.2.1 | Tomato | nucleus | 24.93 | 25.66 |
| KRH06499 | Soybean | nucleus | 27.22 | 25.47 |
| KRH60029 | Soybean | nucleus | 26.36 | 25.34 |
| CDX89127 | Canola | nucleus | 20.06 | 25.27 |
| Bra014426.1-P | Field mustard | nucleus | 20.06 | 25.27 |
| Bra000423.1-P | Field mustard | nucleus | 20.34 | 25.27 |
| CDY42043 | Canola | nucleus | 21.2 | 25.26 |
| Bra009734.1-P | Field mustard | nucleus | 22.64 | 25.24 |
| CDX80414 | Canola | nucleus | 22.64 | 25.24 |
| CDX88077 | Canola | nucleus | 22.64 | 25.24 |
| KRH68901 | Soybean | nucleus | 26.07 | 25.14 |
| PGSC0003DMT400014949 | Potato | nucleus | 25.79 | 25.0 |
| Bra004540.1-P | Field mustard | nucleus | 20.06 | 24.56 |
| CDX83367 | Canola | nucleus | 19.48 | 24.46 |
| Solyc08g008280.2.1 | Tomato | nucleus | 25.21 | 24.44 |
| CDX80015 | Canola | nucleus | 20.63 | 24.32 |
| KRG97154 | Soybean | nucleus | 25.21 | 24.31 |
| GSMUA_Achr7P22020_001 | Banana | extracellular, nucleus | 15.76 | 24.23 |
| KRH64503 | Soybean | nucleus | 25.21 | 24.18 |
| PGSC0003DMT400046351 | Potato | nucleus | 20.34 | 23.59 |
| Os06t0158100-00 | Rice | nucleus | 26.36 | 23.53 |
| Solyc03g007380.1.1 | Tomato | nucleus | 23.78 | 23.51 |
| AT2G46400.1 | Thale cress | nucleus | 19.77 | 23.39 |
| KRH53440 | Soybean | nucleus | 24.36 | 23.35 |
| PGSC0003DMT400023502 | Potato | nucleus | 23.21 | 22.75 |
| EER87882 | Sorghum | nucleus | 24.64 | 22.75 |
| GSMUA_Achr8P01730_001 | Banana | nucleus | 19.48 | 22.15 |
| PGSC0003DMT400084227 | Potato | nucleus | 18.62 | 22.11 |
| Solyc05g050300.1.1 | Tomato | nucleus | 12.32 | 22.05 |
| GSMUA_Achr6P32460_001 | Banana | nucleus | 20.06 | 21.47 |
| Zm00001d045283_P001 | Maize | nucleus | 24.36 | 21.46 |
| PGSC0003DMT400084214 | Potato | nucleus | 20.34 | 21.45 |
| GSMUA_Achr8P25110_001 | Banana | nucleus | 13.47 | 21.17 |
| Solyc05g050330.2.1 | Tomato | nucleus | 14.61 | 20.9 |
| PGSC0003DMT400000599 | Potato | nucleus | 20.34 | 20.52 |
| TraesCS7D01G110600.1 | Wheat | nucleus | 21.49 | 20.38 |
| TraesCS7B01G012600.1 | Wheat | nucleus | 21.2 | 19.95 |
| Solyc01g095630.2.1 | Tomato | nucleus | 19.2 | 19.94 |
| TraesCS7A01G116000.1 | Wheat | nucleus | 21.49 | 19.89 |
| GSMUA_Achr5P07490_001 | Banana | endoplasmic reticulum | 18.91 | 19.7 |
| Solyc05g050340.2.1 | Tomato | nucleus | 18.34 | 19.57 |
| Zm00001d036244_P001 | Maize | nucleus | 20.34 | 19.4 |
| GSMUA_Achr6P25120_001 | Banana | nucleus | 12.32 | 19.37 |
| GSMUA_Achr5P08580_001 | Banana | nucleus | 16.33 | 18.63 |
| CDX80415 | Canola | nucleus | 6.88 | 16.22 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr4G15640_001 | EnsemblPlants:GSMUA_Achr4P15640_001 | EnsemblPlants:GSMUA_Achr4T15640_001 | InterPro:IPR003657 | InterPro:IPR036576 |
| UniProt:M0SP79 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR32096 | PANTHER:PTHR32096:SF20 | SMART:SM00774 |
| SUPFAM:SSF118290 | UniParc:UPI000294E5DB | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | : | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G15640_001]
Coordinates
chr4:-:11945050..11946296
Molecular Weight (calculated)
38396.8 Da
IEP (calculated)
7.927
GRAVY (calculated)
-0.617
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSTGCKHR SLLLAELARA QHLALQLVAH RDQHSPIESF KSLASNIVSS IDKLIHIAGS STSEAKQQLA FPNTVPEDPL RSANKDASAG NFDSVFHRNC
101: NNLSKNRKTL PKKKIQVKVG SGGVAAALDD GYSWRKYGNK NILGSKHSRS YYRCRDRNTK SCFATKQVQR SDEDPQAFDV IYQGTHTCCR GLPVPTTASI
201: SAQERRQNQP DRRLQNDQRV QQPNKDLLMD FQTGMDLDTH ESSLSFRLGS VTAKATLPES INGYSSQPSK PDNCCFGRSP SASELIDISG SPSQLCHSEA
301: GLEPLASDSY VSDSLTPPNS AVDADIRLLE FDTQFGEFSV SCSNLFYTM
101: NNLSKNRKTL PKKKIQVKVG SGGVAAALDD GYSWRKYGNK NILGSKHSRS YYRCRDRNTK SCFATKQVQR SDEDPQAFDV IYQGTHTCCR GLPVPTTASI
201: SAQERRQNQP DRRLQNDQRV QQPNKDLLMD FQTGMDLDTH ESSLSFRLGS VTAKATLPES INGYSSQPSK PDNCCFGRSP SASELIDISG SPSQLCHSEA
301: GLEPLASDSY VSDSLTPPNS AVDADIRLLE FDTQFGEFSV SCSNLFYTM
001: MEMMNWERRS LLNELIHGLK AAKQLQGSSS PSLSASSSYL TTEIKENLLH NIVSSFKKAI LMLNGSTTQH NPTIELAPDP LAHPGKVPGS PASITGNPRS
101: EEFFNVRSKE FNLSSKKRKM LPKWTEQVRI SPERGLEGPH DDIFSWRKYG QKDILGAKFP RSYYRCTFRN TQYCWATKQV QRSDGDPTIF EVTYRGTHTC
201: SQGIPLPEKR ETKPKHTVAV NYQNLRASLT VRTGGLGSEA FSFPVTSPLY TYESINGGGT FYHHVGSSGP SDFTGLISTN TSTGSSPIFD VNFQFDPTAE
301: INTGFPTFFH NSI
101: EEFFNVRSKE FNLSSKKRKM LPKWTEQVRI SPERGLEGPH DDIFSWRKYG QKDILGAKFP RSYYRCTFRN TQYCWATKQV QRSDGDPTIF EVTYRGTHTC
201: SQGIPLPEKR ETKPKHTVAV NYQNLRASLT VRTGGLGSEA FSFPVTSPLY TYESINGGGT FYHHVGSSGP SDFTGLISTN TSTGSSPIFD VNFQFDPTAE
301: INTGFPTFFH NSI
Arabidopsis Description
WRKY41Probable WRKY transcription factor 41 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0Y8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.