Factsheet for GSMUA_Achr5P08580_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P25120_001	Banana	nucleus	36.93	50.9
GSMUA_Achr8P25110_001	Banana	nucleus	25.82	35.59
GSMUA_Achr3P15840_001	Banana	nucleus	20.26	24.9
GSMUA_Achr7P22020_001	Banana	extracellular, nucleus	17.65	23.79
GSMUA_Achr9P04830_001	Banana	nucleus	13.73	23.08
GSMUA_Achr3P25080_001	Banana	nucleus	23.53	21.69
Zm00001d043066_P001	Maize	nucleus	16.99	21.67
EES01666	Sorghum	nucleus	16.67	21.61
GSMUA_Achr1P27980_001	Banana	nucleus	21.57	21.29
HORVU3Hr1G080860.1	Barley	nucleus	16.67	19.92
TraesCS3B01G375200.1	Wheat	nucleus	16.34	19.61
GSMUA_Achr6P05710_001	Banana	nucleus	21.57	19.41
GSMUA_Achr5P07490_001	Banana	endoplasmic reticulum	21.24	19.4
GSMUA_AchrUn_...	Banana	nucleus	18.63	19.32
TraesCS3D01G337000.1	Wheat	nucleus	16.01	19.22
Os01t0820400-01	Rice	nucleus	16.34	18.87
TraesCS3A01G343000.1	Wheat	nucleus	16.01	18.85
GSMUA_Achr6P32460_001	Banana	nucleus	19.93	18.71
GSMUA_Achr7P14140_001	Banana	nucleus	21.24	18.06
GSMUA_Achr10P...	Banana	extracellular, nucleus	17.65	17.42
GSMUA_Achr8P01730_001	Banana	nucleus	16.67	16.61
GSMUA_Achr4P15640_001	Banana	nucleus	18.63	16.33
Zm00001d012508_P001	Maize	mitochondrion	12.42	16.03

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr5G08580_001	EnsemblPlants:GSMUA_Achr5P08580_001	EnsemblPlants:GSMUA_Achr5T08580_001	InterPro:IPR003657	InterPro:IPR036576
UniProt:M0SWT7	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF17	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI0002965A32	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G08580_001]

Coordinates

chr5:-:6266495..6267676

Molecular Weight (calculated)

33800.7 Da

IEP (calculated)

6.946

GRAVY (calculated)

-0.476

Length

306 amino acids

Sequence
(BLAST)

001: MATNSCTSWM LAYKETIALS LLGRQACSPG MGRHAELDSN SEHCDNRLAI DKINQAHELA RQLRAVLLSS SLPAGSSAEL AREILDKLMK CSASALSRLQ
101: SCCCRTCHGV GQRSREKTHN TWCTVTSVPY DDGHSWRKYG QKDINSAKYP RSYYRCIHRK EQGCPATKTV QQEDGDAYPP QFIVAYSMQH TCRSMGASIA
201: FAMESAPKEE ASFEGSRSSR HLLPPPPSTA TAANQSQTSS PSSVGDRDDT TRLSISELSW QEIMNTSPPA DTWSMDSNWE TVMGCFDVGV LCDQVLFLDP
301: LLVRPF

Best Arabidopsis Sequence Match ( AT4G11070.2 )
(BLAST)

001: MEMMNWERRS LLNELIHGLK AAKQLQAILM LNGSTTQHNP TIELAPDPLA HPGKVPGSPA SITGNPRSEE FFNVRSKEFN LSSKKRKMLP KWTEQVRISP
101: ERGLEGPHDD IFSWRKYGQK DILGAKFPRS YYRCTFRNTQ YCWATKQVQR SDGDPTIFEV TYRGTHTCSQ GIPLPEKRET KPKHTVAVNY QNLRASLTVR
201: TGGLGSEAFS FPVTSPLYTY ESINGGGTFY HHVGSSGPSD FTGLISTNTS TGSSPIFDVN FQFDPTAEIN TGFPTFFHNS I

Arabidopsis Description

WRKY41Probable WRKY transcription factor 41 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0Y8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.