Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P25080_001 | Banana | nucleus | 65.46 | 49.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.39 | 40.0 |
| GSMUA_Achr1P27980_001 | Banana | nucleus | 47.39 | 38.06 |
| HORVU2Hr1G029430.2 | Barley | mitochondrion, nucleus | 34.94 | 35.66 |
| TraesCS2B01G187500.1 | Wheat | nucleus | 41.77 | 35.49 |
| TraesCS2D01G168600.1 | Wheat | nucleus | 41.37 | 35.15 |
| TraesCS2A01G161500.1 | Wheat | nucleus | 40.16 | 33.78 |
| VIT_15s0046g01140.t01 | Wine grape | nucleus | 43.37 | 33.44 |
| HORVU5Hr1G034830.3 | Barley | nucleus | 44.58 | 33.43 |
| TraesCS5B01G183700.1 | Wheat | nucleus | 45.38 | 33.33 |
| HORVU3Hr1G059210.1 | Barley | nucleus | 32.53 | 33.2 |
| TraesCS5D01G190700.1 | Wheat | nucleus | 44.98 | 32.84 |
| VIT_02s0025g01280.t01 | Wine grape | nucleus | 44.98 | 32.75 |
| TraesCS5A01G185600.1 | Wheat | nucleus | 44.58 | 32.36 |
| GSMUA_Achr7P14140_001 | Banana | nucleus | 46.59 | 32.22 |
| Os08t0386200-01 | Rice | nucleus | 40.16 | 31.35 |
| TraesCS3D01G238300.1 | Wheat | nucleus | 36.55 | 31.27 |
| GSMUA_Achr6P05710_001 | Banana | nucleus | 42.57 | 31.18 |
| Os01t0656400-00 | Rice | nucleus | 34.14 | 31.02 |
| Zm00001d020136_P001 | Maize | nucleus | 36.55 | 30.13 |
| TraesCS5B01G183800.1 | Wheat | nucleus | 41.77 | 30.06 |
| Zm00001d020137_P001 | Maize | nucleus | 38.96 | 29.94 |
| Zm00001d032265_P001 | Maize | nucleus | 39.76 | 29.73 |
| OQU80381 | Sorghum | nucleus | 40.56 | 29.71 |
| EER96589 | Sorghum | nucleus | 36.95 | 29.68 |
| EER96590 | Sorghum | nucleus | 38.96 | 29.57 |
| TraesCS5D01G190800.1 | Wheat | nucleus | 41.37 | 29.34 |
| KRH68901 | Soybean | nucleus | 42.57 | 29.28 |
| HORVU3Hr1G059220.1 | Barley | nucleus | 36.14 | 29.22 |
| Os09t0334500-01 | Rice | nucleus | 42.17 | 29.09 |
| HORVU3Hr1G058670.1 | Barley | nucleus | 28.92 | 28.92 |
| KRH53440 | Soybean | nucleus | 42.17 | 28.85 |
| HORVU0Hr1G012740.1 | Barley | nucleus | 37.35 | 28.79 |
| Zm00001d050247_P001 | Maize | nucleus | 36.95 | 28.75 |
| Zm00001d005622_P001 | Maize | nucleus | 38.15 | 28.7 |
| TraesCS1B01G440700.1 | Wheat | nucleus | 27.71 | 28.63 |
| KRH64503 | Soybean | nucleus | 41.77 | 28.57 |
| TraesCS5A01G185700.1 | Wheat | nucleus | 39.76 | 28.37 |
| Solyc08g082110.2.1 | Tomato | nucleus | 38.55 | 28.32 |
| PGSC0003DMT400031695 | Potato | nucleus | 38.15 | 28.02 |
| TraesCS1D01G418600.1 | Wheat | nucleus | 27.71 | 27.94 |
| Solyc10g009550.2.1 | Tomato | nucleus | 32.53 | 27.93 |
| KRG97154 | Soybean | nucleus | 40.56 | 27.9 |
| CDY65042 | Canola | nucleus | 36.95 | 27.88 |
| Os05t0571200-01 | Rice | nucleus | 30.92 | 27.8 |
| Bra000423.1-P | Field mustard | nucleus | 31.33 | 27.76 |
| VIT_16s0050g02510.t01 | Wine grape | nucleus | 40.56 | 27.75 |
| TraesCS1B01G440600.1 | Wheat | nucleus | 26.51 | 27.73 |
| KRH77637 | Soybean | nucleus | 35.74 | 27.64 |
| Os11t0685700-00 | Rice | nucleus | 21.29 | 27.6 |
| TraesCS1B01G440300.1 | Wheat | nucleus | 26.91 | 27.35 |
| PGSC0003DMT400014949 | Potato | nucleus | 39.36 | 27.22 |
| HORVU1Hr1G090190.2 | Barley | nucleus | 27.71 | 27.17 |
| AT4G11070.1 | Thale cress | nucleus | 34.14 | 27.16 |
| TraesCS1A01G410700.1 | Wheat | nucleus | 26.91 | 27.13 |
| CDX95699 | Canola | nucleus | 30.92 | 27.02 |
| CDX83367 | Canola | nucleus | 30.12 | 26.98 |
| PGSC0003DMT400051194 | Potato | nucleus | 31.33 | 26.9 |
| Bra033158.1-P | Field mustard | nucleus | 35.74 | 26.89 |
| CDY25271 | Canola | nucleus | 35.74 | 26.89 |
| PGSC0003DMT400000599 | Potato | nucleus | 37.35 | 26.88 |
| TraesCS1D01G418500.1 | Wheat | nucleus | 26.1 | 26.86 |
| KRH47935 | Soybean | nucleus | 39.76 | 26.83 |
| TraesCS1D01G418000.1 | Wheat | nucleus | 26.51 | 26.83 |
| Bra004540.1-P | Field mustard | nucleus | 30.52 | 26.67 |
| Zm00001d011496_P002 | Maize | nucleus | 34.94 | 26.61 |
| GSMUA_Achr10P... | Banana | extracellular, nucleus | 32.93 | 26.45 |
| HORVU1Hr1G090170.1 | Barley | nucleus | 26.1 | 26.32 |
| CDY42043 | Canola | nucleus | 30.92 | 26.28 |
| TraesCS1D01G418400.1 | Wheat | nucleus | 26.91 | 26.27 |
| Solyc08g008280.2.1 | Tomato | nucleus | 37.75 | 26.11 |
| EES18716 | Sorghum | nucleus | 28.51 | 26.1 |
| HORVU1Hr1G090110.1 | Barley | nucleus | 26.51 | 26.09 |
| TraesCS1A01G410500.1 | Wheat | nucleus | 26.51 | 26.09 |
| HORVU5Hr1G056130.2 | Barley | nucleus | 40.96 | 26.02 |
| CDX80015 | Canola | nucleus | 30.92 | 26.01 |
| KRH06499 | Soybean | nucleus | 38.96 | 26.01 |
| HORVU0Hr1G012750.1 | Barley | nucleus | 34.54 | 25.9 |
| EES03370 | Sorghum | nucleus | 35.74 | 25.72 |
| Bra019265.1-P | Field mustard | nucleus | 33.33 | 25.7 |
| CDY10969 | Canola | nucleus | 33.33 | 25.7 |
| CDY47621 | Canola | nucleus | 32.53 | 25.63 |
| AT2G46400.1 | Thale cress | nucleus | 30.12 | 25.42 |
| CDY03518 | Canola | nucleus | 32.13 | 25.4 |
| KRH41300 | Soybean | nucleus | 36.55 | 25.35 |
| Bra026467.1-P | Field mustard | nucleus | 31.73 | 25.32 |
| CDX87141 | Canola | nucleus | 31.73 | 25.32 |
| Bra013732.1-P | Field mustard | nucleus | 32.13 | 25.32 |
| AT4G23810.1 | Thale cress | nucleus | 32.93 | 25.31 |
| Solyc01g095630.2.1 | Tomato | nucleus | 34.14 | 25.3 |
| TraesCS1B01G440500.1 | Wheat | nucleus | 26.51 | 25.29 |
| Bra014426.1-P | Field mustard | nucleus | 28.11 | 25.27 |
| CDX89127 | Canola | nucleus | 28.11 | 25.27 |
| CDX94221 | Canola | nucleus | 32.53 | 25.23 |
| KRH60029 | Soybean | nucleus | 36.55 | 25.07 |
| HORVU1Hr1G090130.4 | Barley | nucleus | 26.1 | 25.0 |
| GSMUA_Achr9P04830_001 | Banana | nucleus | 18.07 | 24.73 |
| CDY19847 | Canola | nucleus | 30.92 | 24.68 |
| GSMUA_Achr4P15640_001 | Banana | nucleus | 34.54 | 24.64 |
| CDX80414 | Canola | nucleus | 30.92 | 24.6 |
| TraesCS1A01G410600.1 | Wheat | nucleus | 22.89 | 24.46 |
| AT5G24110.1 | Thale cress | nucleus | 29.72 | 24.42 |
| Bra009734.1-P | Field mustard | nucleus | 30.12 | 23.96 |
| CDX88077 | Canola | nucleus | 30.12 | 23.96 |
| Solyc03g007380.1.1 | Tomato | nucleus | 33.33 | 23.51 |
| Zm00001d044010_P001 | Maize | nucleus | 31.33 | 23.28 |
| Zm00001d009619_P002 | Maize | nucleus | 27.71 | 23.23 |
| PGSC0003DMT400023502 | Potato | nucleus | 32.13 | 22.47 |
| GSMUA_Achr7P22020_001 | Banana | extracellular, nucleus | 20.08 | 22.03 |
| Solyc05g050330.2.1 | Tomato | nucleus | 21.29 | 21.72 |
| GSMUA_Achr8P01730_001 | Banana | nucleus | 26.1 | 21.17 |
| GSMUA_Achr5P07490_001 | Banana | endoplasmic reticulum | 27.31 | 20.3 |
| GSMUA_Achr8P25110_001 | Banana | nucleus | 18.07 | 20.27 |
| GSMUA_Achr5P08580_001 | Banana | nucleus | 24.9 | 20.26 |
| PGSC0003DMT400084227 | Potato | nucleus | 23.69 | 20.07 |
| Solyc05g050300.1.1 | Tomato | nucleus | 15.66 | 20.0 |
| GSMUA_Achr6P32460_001 | Banana | nucleus | 26.1 | 19.94 |
| PGSC0003DMT400046351 | Potato | nucleus | 23.69 | 19.6 |
| PGSC0003DMT400084214 | Potato | nucleus | 24.9 | 18.73 |
| Solyc05g050310.1.1 | Tomato | cytosol, nucleus | 4.42 | 18.64 |
| Solyc05g050340.2.1 | Tomato | nucleus | 23.69 | 18.04 |
| GSMUA_Achr6P25120_001 | Banana | nucleus | 14.46 | 16.22 |
| CDX80415 | Canola | nucleus | 8.84 | 14.86 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr3G15840_001 | EnsemblPlants:GSMUA_Achr3P15840_001 | EnsemblPlants:GSMUA_Achr3T15840_001 | InterPro:IPR003657 |
| InterPro:IPR036576 | UniProt:M0SF00 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR32096 | PANTHER:PTHR32096:SF20 |
| SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI000294B9C0 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_46.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G15840_001]
Coordinates
chr3:-:16825195..16826391
Molecular Weight (calculated)
27693.6 Da
IEP (calculated)
8.920
GRAVY (calculated)
-0.802
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKDQCLLLA ELARARKLVG QMEAELHRHS ANESCKALLR ELFASIEKSI CMAKTSRPDS SRPSSGESSQ SDPSKPGFKD HTPKKRKTLP KWTSEVRVSS
101: AAGGVFEGPV DDGYSWRKYG QKDILGAKHP RGYYRCTHRV AQGCPAMKQV QRSDEDPLLF HVTYHGMHTC LRKQGQKQRR PKEDEHQTGL RNCFSSSTSP
201: TFQSPAASDS TFFSLSRCVF EDGIKLWSPE SEVTEMVSGA NSAANPPAD
101: AAGGVFEGPV DDGYSWRKYG QKDILGAKHP RGYYRCTHRV AQGCPAMKQV QRSDEDPLLF HVTYHGMHTC LRKQGQKQRR PKEDEHQTGL RNCFSSSTSP
201: TFQSPAASDS TFFSLSRCVF EDGIKLWSPE SEVTEMVSGA NSAANPPAD
001: MEKNHSSGEW EKMKNEINEL MIEGRDYAHQ FGSASSQETR EHLAKKILQS YHKSLTIMNY SGELDQVSQG GGSPKSDDSD QEPLVIKSSK KSMPRWSSKV
101: RIAPGAGVDR TLDDGFSWRK YGQKDILGAK FPRGYYRCTY RKSQGCEATK QVQRSDENQM LLEISYRGIH SCSQAANVGT TMPIQNLEPN QTQEHGNLDM
201: VKESVDNYNH QAHLHHNLHY PLSSTPNLEN NNAYMLQMRD QNIEYFGSTS FSSDLGTSIN YNFPASGSAS HSASNSPSTV PLESPFESYD PNHPYGGFGG
301: FYS
101: RIAPGAGVDR TLDDGFSWRK YGQKDILGAK FPRGYYRCTY RKSQGCEATK QVQRSDENQM LLEISYRGIH SCSQAANVGT TMPIQNLEPN QTQEHGNLDM
201: VKESVDNYNH QAHLHHNLHY PLSSTPNLEN NNAYMLQMRD QNIEYFGSTS FSSDLGTSIN YNFPASGSAS HSASNSPSTV PLESPFESYD PNHPYGGFGG
301: FYS
Arabidopsis Description
WRKY30Probable WRKY transcription factor 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL62]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.