Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G440600.1 | Wheat | nucleus | 90.08 | 91.6 |
| HORVU1Hr1G090170.1 | Barley | nucleus | 92.15 | 90.28 |
| TraesCS1A01G410600.1 | Wheat | nucleus | 83.47 | 86.7 |
| TraesCS1D01G418600.1 | Wheat | nucleus | 80.17 | 78.54 |
| TraesCS1D01G418400.1 | Wheat | nucleus | 75.62 | 71.76 |
| TraesCS1D01G418000.1 | Wheat | nucleus | 71.07 | 69.92 |
| Os05t0571200-01 | Rice | nucleus | 57.44 | 50.18 |
| EES18716 | Sorghum | nucleus | 49.17 | 43.75 |
| Zm00001d009619_P002 | Maize | nucleus | 50.83 | 41.41 |
| TraesCS3D01G238300.1 | Wheat | nucleus | 44.63 | 37.11 |
| TraesCS2D01G168600.1 | Wheat | nucleus | 35.12 | 29.01 |
| GSMUA_Achr3P25080_001 | Banana | nucleus | 35.95 | 26.2 |
| GSMUA_Achr3P15840_001 | Banana | nucleus | 26.86 | 26.1 |
| VIT_15s0046g01140.t01 | Wine grape | nucleus | 33.47 | 25.08 |
| TraesCS5D01G190700.1 | Wheat | nucleus | 33.47 | 23.75 |
| CDY03518 | Canola | nucleus | 30.17 | 23.17 |
| Solyc10g009550.2.1 | Tomato | nucleus | 27.69 | 23.1 |
| Bra013732.1-P | Field mustard | nucleus | 30.17 | 23.1 |
| CDY47621 | Canola | nucleus | 30.17 | 23.1 |
| TraesCS5D01G190800.1 | Wheat | nucleus | 33.47 | 23.08 |
| Bra019265.1-P | Field mustard | nucleus | 30.58 | 22.91 |
| CDX94221 | Canola | nucleus | 30.17 | 22.74 |
| AT4G11070.1 | Thale cress | nucleus | 29.34 | 22.68 |
| CDY10969 | Canola | nucleus | 30.17 | 22.6 |
| PGSC0003DMT400051194 | Potato | nucleus | 26.86 | 22.41 |
| CDX83367 | Canola | nucleus | 25.62 | 22.3 |
| AT4G23810.1 | Thale cress | nucleus | 29.75 | 22.22 |
| Bra000423.1-P | Field mustard | nucleus | 25.62 | 22.06 |
| KRH77637 | Soybean | nucleus | 29.34 | 22.05 |
| VIT_16s0050g02510.t01 | Wine grape | nucleus | 33.06 | 21.98 |
| Solyc08g082110.2.1 | Tomato | nucleus | 30.58 | 21.83 |
| Solyc03g007380.1.1 | Tomato | nucleus | 31.41 | 21.53 |
| CDY65042 | Canola | nucleus | 29.34 | 21.52 |
| KRH60029 | Soybean | nucleus | 32.23 | 21.49 |
| PGSC0003DMT400031695 | Potato | nucleus | 29.75 | 21.24 |
| KRH41300 | Soybean | nucleus | 31.41 | 21.17 |
| Bra033158.1-P | Field mustard | nucleus | 28.93 | 21.15 |
| CDY25271 | Canola | nucleus | 28.93 | 21.15 |
| CDX95699 | Canola | nucleus | 24.79 | 21.05 |
| AT2G46400.1 | Thale cress | nucleus | 25.62 | 21.02 |
| Solyc05g050330.2.1 | Tomato | nucleus | 21.07 | 20.9 |
| PGSC0003DMT400023502 | Potato | nucleus | 30.58 | 20.79 |
| KRH64503 | Soybean | nucleus | 30.99 | 20.6 |
| CDX87141 | Canola | nucleus | 26.45 | 20.51 |
| VIT_02s0025g01280.t01 | Wine grape | nucleus | 28.93 | 20.47 |
| TraesCS3D01G337500.1 | Wheat | nucleus | 22.73 | 20.37 |
| KRH53440 | Soybean | nucleus | 30.58 | 20.33 |
| TraesCS3D01G337600.1 | Wheat | nucleus | 22.73 | 20.3 |
| Bra026467.1-P | Field mustard | nucleus | 26.03 | 20.19 |
| KRH68901 | Soybean | nucleus | 30.17 | 20.17 |
| KRG97154 | Soybean | nucleus | 30.17 | 20.17 |
| CDY42043 | Canola | nucleus | 24.38 | 20.14 |
| Bra004540.1-P | Field mustard | nucleus | 23.55 | 20.0 |
| Solyc01g095630.2.1 | Tomato | nucleus | 27.69 | 19.94 |
| CDX80015 | Canola | nucleus | 24.38 | 19.93 |
| TraesCS4D01G178400.1 | Wheat | nucleus | 16.94 | 19.9 |
| CDY19847 | Canola | nucleus | 25.62 | 19.87 |
| CDX89127 | Canola | nucleus | 22.73 | 19.86 |
| Bra014426.1-P | Field mustard | nucleus | 22.73 | 19.86 |
| TraesCS7D01G110600.1 | Wheat | nucleus | 30.17 | 19.84 |
| AT5G24110.1 | Thale cress | nucleus | 24.79 | 19.8 |
| PGSC0003DMT400014949 | Potato | nucleus | 29.34 | 19.72 |
| Bra009734.1-P | Field mustard | nucleus | 25.21 | 19.49 |
| CDX80414 | Canola | nucleus | 25.21 | 19.49 |
| CDX88077 | Canola | nucleus | 25.21 | 19.49 |
| Solyc05g050300.1.1 | Tomato | nucleus | 15.7 | 19.49 |
| TraesCS1D01G300700.1 | Wheat | nucleus | 24.38 | 19.47 |
| Solyc08g008280.2.1 | Tomato | nucleus | 28.93 | 19.44 |
| TraesCS4D01G119700.1 | Wheat | nucleus | 17.77 | 19.37 |
| PGSC0003DMT400000599 | Potato | nucleus | 27.69 | 19.36 |
| KRH47935 | Soybean | nucleus | 28.93 | 18.97 |
| PGSC0003DMT400046351 | Potato | nucleus | 23.14 | 18.6 |
| KRH06499 | Soybean | nucleus | 28.51 | 18.5 |
| PGSC0003DMT400084227 | Potato | nucleus | 22.31 | 18.37 |
| TraesCS3D01G337000.1 | Wheat | nucleus | 19.01 | 18.04 |
| TraesCS2D01G042700.1 | Wheat | nucleus | 21.49 | 17.75 |
| TraesCS7D01G345700.1 | Wheat | nucleus | 21.07 | 17.11 |
| Solyc05g050310.1.1 | Tomato | cytosol, nucleus | 4.13 | 16.95 |
| TraesCS1D01G300500.1 | Wheat | plastid | 21.49 | 16.94 |
| TraesCS3D01G337100.1 | Wheat | nucleus | 18.59 | 16.85 |
| TraesCS2D01G489700.1 | Wheat | nucleus | 20.25 | 16.72 |
| TraesCS4D01G172200.1 | Wheat | nucleus | 20.66 | 16.72 |
| TraesCS1D01G300300.1 | Wheat | nucleus | 20.66 | 16.29 |
| Solyc05g050340.2.1 | Tomato | nucleus | 21.9 | 16.21 |
| TraesCS3D01G337400.1 | Wheat | nucleus | 21.49 | 16.15 |
| TraesCS2D01G104600.1 | Wheat | nucleus | 22.31 | 16.07 |
| PGSC0003DMT400084214 | Potato | nucleus | 21.49 | 15.71 |
| TraesCS2D01G104700.1 | Wheat | nucleus | 21.49 | 15.03 |
| TraesCS2D01G104500.1 | Wheat | nucleus | 21.49 | 14.81 |
| TraesCS6D01G074200.1 | Wheat | nucleus | 23.14 | 14.36 |
| TraesCS1D01G300600.1 | Wheat | nucleus | 16.94 | 14.29 |
| TraesCS1D01G300400.1 | Wheat | nucleus | 16.94 | 14.29 |
| TraesCS1D01G300900.1 | Wheat | nucleus | 15.7 | 13.1 |
| TraesCS2D01G497600.1 | Wheat | nucleus | 18.59 | 12.43 |
| TraesCS3D01G337300.1 | Wheat | nucleus | 17.77 | 11.47 |
| TraesCS2D01G497700.1 | Wheat | nucleus | 16.94 | 11.36 |
| CDX80415 | Canola | nucleus | 4.55 | 7.43 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 |
| PFscan:PS50811 | PANTHER:PTHR32096 | PANTHER:PTHR32096:SF20 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS1D01G418500 |
| EnsemblPlants:TraesCS1D01G418500.1 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1D:+:475918713..475919441
Molecular Weight (calculated)
25502.1 Da
IEP (calculated)
5.321
GRAVY (calculated)
-0.224
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDAMATLAT ELDGLLAMAR ELEARVDGDQ GAPGAARELC AALAASVDRA VRLAGRDGNA GGRASVNGQL RSRKAAAAKV RTQVRVASMQ DLGPLDDGLS
101: WRKYGQKDIL GATYPRSYFR CTHRHTQGCA ATKQVQRATA DPLLFDVVYL GAHTCAQAAV LAGAEQQLPP PAAFGQEQQS PPEGVQWPAE PVTPFSFPSS
201: PASSWCQLTG SYGYAAAGGG LGVDMELEGQ LDELFLDLSG YF
101: WRKYGQKDIL GATYPRSYFR CTHRHTQGCA ATKQVQRATA DPLLFDVVYL GAHTCAQAAV LAGAEQQLPP PAAFGQEQQS PPEGVQWPAE PVTPFSFPSS
201: PASSWCQLTG SYGYAAAGGG LGVDMELEGQ LDELFLDLSG YF
001: MEMMNWERRS LLNELIHGLK AAKQLQAILM LNGSTTQHNP TIELAPDPLA HPGKVPGSPA SITGNPRSEE FFNVRSKEFN LSSKKRKMLP KWTEQVRISP
101: ERGLEGPHDD IFSWRKYGQK DILGAKFPRS YYRCTFRNTQ YCWATKQVQR SDGDPTIFEV TYRGTHTCSQ GIPLPEKRET KPKHTVAVNY QNLRASLTVR
201: TGGLGSEAFS FPVTSPLYTY ESINGGGTFY HHVGSSGPSD FTGLISTNTS TGSSPIFDVN FQFDPTAEIN TGFPTFFHNS I
101: ERGLEGPHDD IFSWRKYGQK DILGAKFPRS YYRCTFRNTQ YCWATKQVQR SDGDPTIFEV TYRGTHTCSQ GIPLPEKRET KPKHTVAVNY QNLRASLTVR
201: TGGLGSEAFS FPVTSPLYTY ESINGGGTFY HHVGSSGPSD FTGLISTNTS TGSSPIFDVN FQFDPTAEIN TGFPTFFHNS I
Arabidopsis Description
WRKY41Probable WRKY transcription factor 41 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0Y8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.