CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92515
EES01631
EES09201
EES16322
KXG20217
KXG37587
KXG37588
OQU78227
OQU85800
OQU91136

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23810.1	EES01631	AT2G41090.1	17360592
AT4G23810.1	EES09201	AT2G41090.1	17360592
AT4G23810.1	EES16322	AT2G41090.1	17360592
AT4G23810.1	OQU78227	AT2G41090.1	17360592
AT4G23810.1	EES01631	AT2G41100.1	17360592
AT4G23810.1	EES09201	AT2G41100.1	17360592
AT4G23810.1	EES16322	AT2G41100.1	17360592
AT4G23810.1	OQU78227	AT2G41100.1	17360592
AT4G23810.1	EER92515	AT4G08500.1	17587183
AT4G23810.1	KXG20217	AT4G08500.1	17587183
AT4G23810.1	OQU85800	AT4G08500.1	17587183
AT4G23810.1	OQU91136	AT4G08500.1	17587183
AT4G23810.1	KXG37587	AT4G14640.1	17360592
AT4G23810.1	KXG37588	AT4G14640.1	17360592
AT4G23810.1	EES01631	AT5G21274.1	17360592
AT4G23810.1	EES09201	AT5G21274.1	17360592
AT4G23810.1	EES16322	AT5G21274.1	17360592
AT4G23810.1	OQU78227	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009619_P002	Maize	nucleus	79.41	72.73
TraesCS1B01G440700.1	Wheat	nucleus	46.32	52.28
Os05t0571200-01	Rice	nucleus	52.94	51.99
TraesCS1B01G440300.1	Wheat	nucleus	46.32	51.43
TraesCS1A01G410700.1	Wheat	nucleus	46.69	51.42
HORVU1Hr1G090190.2	Barley	nucleus	47.06	50.39
TraesCS1D01G418600.1	Wheat	nucleus	45.59	50.2
TraesCS1D01G418400.1	Wheat	nucleus	46.32	49.41
TraesCS1D01G418500.1	Wheat	nucleus	43.75	49.17
TraesCS1D01G418000.1	Wheat	nucleus	44.12	48.78
TraesCS1B01G440600.1	Wheat	nucleus	42.65	48.74
TraesCS1B01G440500.1	Wheat	nucleus	46.32	48.28
TraesCS1A01G410500.1	Wheat	nucleus	44.49	47.83
HORVU1Hr1G090130.4	Barley	nucleus	45.22	47.31
HORVU1Hr1G090170.1	Barley	nucleus	42.65	46.96
HORVU1Hr1G090110.1	Barley	nucleus	42.65	45.85
TraesCS1A01G410600.1	Wheat	nucleus	36.03	42.06
EES03370	Sorghum	nucleus	41.91	32.95
GSMUA_Achr3P15840_001	Banana	nucleus	26.1	28.51
GSMUA_Achr3P25080_001	Banana	nucleus	33.82	27.71
OQU80381	Sorghum	nucleus	31.99	25.59
VIT_15s0046g01140.t01	Wine grape	nucleus	30.15	25.39
EER96589	Sorghum	nucleus	28.31	24.84
Bra013732.1-P	Field mustard	nucleus	28.68	24.68
CDY03518	Canola	nucleus	28.31	24.44
CDY47621	Canola	nucleus	28.31	24.37
Solyc08g082110.2.1	Tomato	nucleus	29.78	23.89
PGSC0003DMT400031695	Potato	nucleus	29.78	23.89
Bra019265.1-P	Field mustard	nucleus	28.31	23.84
EER96590	Sorghum	nucleus	28.68	23.78
AT4G23810.1	Thale cress	nucleus	28.31	23.77
CDX94221	Canola	nucleus	27.94	23.68
AT4G11070.1	Thale cress	nucleus	27.21	23.64
Solyc10g009550.2.1	Tomato	nucleus	25.0	23.45
CDY10969	Canola	nucleus	27.57	23.22
Bra026467.1-P	Field mustard	nucleus	26.47	23.08
KRH77637	Soybean	nucleus	27.21	22.98
Solyc05g050330.2.1	Tomato	nucleus	20.59	22.95
VIT_16s0050g02510.t01	Wine grape	nucleus	30.51	22.8
PGSC0003DMT400051194	Potato	nucleus	24.26	22.76
CDX87141	Canola	nucleus	26.1	22.76
CDY19847	Canola	nucleus	26.1	22.76
CDX80414	Canola	nucleus	25.74	22.36
KRH41300	Soybean	nucleus	29.41	22.28
PGSC0003DMT400000599	Potato	nucleus	28.31	22.25
CDY65042	Canola	nucleus	26.84	22.12
KRH68901	Soybean	nucleus	29.41	22.1
KRG97154	Soybean	nucleus	29.41	22.1
KRH60029	Soybean	nucleus	29.41	22.04
Solyc08g008280.2.1	Tomato	nucleus	29.04	21.94
Solyc03g007380.1.1	Tomato	nucleus	28.31	21.81
AT5G24110.1	Thale cress	nucleus	24.26	21.78
CDY25271	Canola	nucleus	26.47	21.75
Bra033158.1-P	Field mustard	nucleus	26.47	21.75
PGSC0003DMT400014949	Potato	nucleus	28.68	21.67
VIT_02s0025g01280.t01	Wine grape	nucleus	27.21	21.64
CDX88077	Canola	nucleus	24.63	21.41
Bra009734.1-P	Field mustard	nucleus	24.63	21.41
PGSC0003DMT400023502	Potato	nucleus	27.94	21.35
KRH06499	Soybean	nucleus	29.04	21.18
EER87882	Sorghum	nucleus	29.04	20.9
Solyc01g095630.2.1	Tomato	nucleus	25.74	20.83
Bra000423.1-P	Field mustard	nucleus	21.32	20.64
KRH64503	Soybean	nucleus	27.57	20.6
KRH53440	Soybean	nucleus	27.57	20.6
KRH47935	Soybean	nucleus	27.94	20.6
Bra014426.1-P	Field mustard	nucleus	20.96	20.58
EES01669	Sorghum	nucleus	20.96	20.58
CDX89127	Canola	nucleus	20.96	20.58
Solyc05g050310.1.1	Tomato	cytosol, nucleus	4.41	20.34
PGSC0003DMT400046351	Potato	nucleus	22.06	19.93
EES01666	Sorghum	nucleus	17.28	19.92
CDY42043	Canola	nucleus	21.32	19.8
CDX83367	Canola	nucleus	20.22	19.78
EES01667	Sorghum	nucleus	19.12	19.7
CDX95699	Canola	nucleus	20.59	19.65
AT2G46400.1	Thale cress	nucleus	20.96	19.32
Bra004540.1-P	Field mustard	nucleus	20.22	19.3
CDX80015	Canola	nucleus	20.96	19.26
PGSC0003DMT400084227	Potato	nucleus	20.59	19.05
EES19695	Sorghum	nucleus	16.18	18.72
EES15768	Sorghum	nucleus	22.79	18.56
Solyc05g050300.1.1	Tomato	nucleus	13.24	18.46
CDX80415	Canola	nucleus	9.56	17.57
EER94940	Sorghum	nucleus	13.97	16.89
Solyc05g050340.2.1	Tomato	nucleus	20.22	16.82
OQU82729	Sorghum	nucleus	13.97	16.74
OQU88981	Sorghum	plastid	16.91	16.73
PGSC0003DMT400084214	Potato	nucleus	20.22	16.62
OQU78676	Sorghum	nucleus	13.6	16.44
OQU82725	Sorghum	nucleus	19.85	16.17
EES03804	Sorghum	nucleus	19.12	15.62
OQU77713	Sorghum	nucleus	20.96	15.08
EER94905	Sorghum	nucleus	18.01	14.94
EER99917	Sorghum	mitochondrion, nucleus	19.12	14.69
EES09135	Sorghum	nucleus	19.12	14.4
EES01668	Sorghum	nucleus	19.85	14.32

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8064699	UniProt:C5YVZ9	ncoils:Coil	EnsemblPlants:EES18716
ProteinID:EES18716	ProteinID:EES18716.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR32096
PANTHER:PTHR32096:SF20	SMART:SM00774	EnsemblPlantsGene:SORBI_3009G238200	SUPFAM:SSF118290	UniParc:UPI0001A8871E	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	RefSeq:XP_002440286.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:57628850..57630763

Molecular Weight (calculated)

29085.0 Da

IEP (calculated)

6.155

GRAVY (calculated)

-0.384

Length

272 amino acids

Sequence
(BLAST)

001: MDGYGSYGGE KSALASELAQ VLAMVRELEA RMDQDPLPAA ARELCAELAS SVDRSIRIAR SCCVDSPASG SGSPRSDGGN AGAAQSKRRK GTPCVRRQLR
101: AASVQDAAAL DDGLSWRKYG QKDILGAKYP RAYFRCTYRH SQGCLATKHV QRADGDPLLH DVVYHGAHTC AQAAHPSAQQ LRQELQLQPG HGAQEDQASP
201: LALETEGLRA ALLEPMTPYS FATVAGAGAG ASAGADFAGW CPLLSPTALD WQFEELFTNA MEPFQWDLYT AN

Best Arabidopsis Sequence Match ( AT4G23810.1 )
(BLAST)

001: MEGRDMLSWE QKTLLSELIN GFDAAKKLQA RLREAPSPSS SFSSPATAVA ETNEILVKQI VSSYERSLLL LNWSSSPSVQ LIPTPVTVVP VANPGSVPES
101: PASINGSPRS EEFADGGGSS ESHHRQDYIF NSKKRKMLPK WSEKVRISPE RGLEGPQDDV FSWRKYGQKD ILGAKFPRSY YRCTHRSTQN CWATKQVQRS
201: DGDATVFEVT YRGTHTCSQA ITRTPPLASP EKRQDTRVKP AITQKPKDIL ESLKSNLTVR TDGLDDGKDV FSFPDTPPFY NYGTINGEFG HVESSPIFDV
301: VDWFNPTVEI DTTFPAFLHE SIYY

Arabidopsis Description

WRKY53Probable WRKY transcription factor 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUP6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.