CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012505_P001	Maize	nucleus	79.06	82.95
TraesCS3D01G337600.1	Wheat	nucleus	53.07	54.24
Os01t0821600-01	Rice	nucleus	54.51	53.93
TraesCS3B01G375800.1	Wheat	nucleus	51.99	53.53
TraesCS3A01G343900.1	Wheat	nucleus	52.35	53.11
TraesCS3D01G337500.1	Wheat	nucleus	50.54	51.85
TraesCS3A01G343700.1	Wheat	nucleus	50.18	51.1
TraesCS3B01G375700.1	Wheat	nucleus	49.82	50.74
HORVU3Hr1G080980.1	Barley	nucleus	42.96	48.57
HORVU3Hr1G081030.3	Barley	nucleus	50.9	44.06
PGSC0003DMT400070939	Potato	nucleus	20.22	25.11
PGSC0003DMT400021625	Potato	nucleus	18.41	23.39
KRH09521	Soybean	nucleus	21.66	22.64
KRH00435	Soybean	nucleus	23.1	21.4
EER96589	Sorghum	nucleus	23.83	21.29
KRH16921	Soybean	nucleus	18.41	21.25
EES18716	Sorghum	nucleus	20.58	20.96
KRH40720	Soybean	nucleus	22.38	20.67
PGSC0003DMT400053122	Potato	nucleus	20.58	20.58
KRH21928	Soybean	nucleus	19.86	20.37
EES01666	Sorghum	nucleus	17.33	20.34
OQU80381	Sorghum	nucleus	24.91	20.29
Solyc03g095770.2.1	Tomato	nucleus	19.86	20.15
EES15768	Sorghum	nucleus	24.19	20.06
EER96590	Sorghum	nucleus	23.47	19.82
KRH21925	Soybean	nucleus	20.94	19.73
KRH21926	Soybean	nucleus	20.94	19.59
VIT_13s0067g03140.t01	Wine grape	nucleus	21.66	19.17
KRH16920	Soybean	nucleus	20.94	19.14
EES01667	Sorghum	nucleus	17.69	18.56
GSMUA_Achr5P07490_001	Banana	endoplasmic reticulum	22.38	18.51
EES19695	Sorghum	nucleus	15.52	18.3
EER94905	Sorghum	nucleus	21.66	18.29
KRH21927	Soybean	nucleus	19.49	18.0
KRH16918	Soybean	nucleus	21.3	17.93
KRH64216	Soybean	nucleus	20.22	17.67
KRH53716	Soybean	nucleus	20.22	17.55
EER94940	Sorghum	nucleus	14.08	17.33
OQU88981	Sorghum	plastid	16.97	17.09
OQU78676	Sorghum	nucleus	13.72	16.89
Solyc09g015770.2.1	Tomato	extracellular, nucleus	17.69	16.84
OQU82729	Sorghum	nucleus	13.72	16.74
PGSC0003DMT400075091	Potato	nucleus	17.69	16.72
EER99917	Sorghum	mitochondrion, nucleus	21.3	16.67
CDY27218	Canola	nucleus	16.61	16.67
Bra007243.1-P	Field mustard	nucleus	16.61	16.67
CDX72140	Canola	nucleus	16.61	16.67
AT3G56400.1	Thale cress	nucleus	17.33	16.33
KRH64882	Soybean	nucleus	13.72	16.17
CDX75992	Canola	nucleus	16.61	16.14
Bra014692.1-P	Field mustard	nucleus	16.61	16.14
CDY66845	Canola	nucleus	16.61	16.03
Bra003239.1-P	Field mustard	nucleus	16.25	15.9
CDX67645	Canola	nucleus	16.25	15.9
CDY32013	Canola	nucleus	15.88	15.55
EER87882	Sorghum	nucleus	20.94	15.34
EES03804	Sorghum	nucleus	18.41	15.32
VIT_08s0058g01390.t01	Wine grape	nucleus	19.13	14.85
OQU77713	Sorghum	nucleus	20.22	14.81
Bra000203.1-P	Field mustard	nucleus	17.33	14.12
CDY35441	Canola	nucleus	17.33	14.12
Bra016974.1-P	Field mustard	nucleus	16.61	13.94
CDY06967	Canola	nucleus	16.61	13.94
EES03370	Sorghum	nucleus	17.33	13.87
CDY22474	Canola	nucleus	16.97	13.82
OQU82725	Sorghum	nucleus	16.61	13.77
CDX79972	Canola	nucleus	16.61	13.65
CDY14738	Canola	nucleus	16.25	13.64
CDY23883	Canola	nucleus	16.61	13.57
Bra004586.1-P	Field mustard	nucleus	16.61	13.57
EES09135	Sorghum	nucleus	16.97	13.02
EES01668	Sorghum	nucleus	17.69	13.0
AT2G40750.1	Thale cress	nucleus	15.52	12.43

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8085397	UniProt:C5XNA3	EnsemblPlants:EES01669	ProteinID:EES01669
ProteinID:EES01669.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF10
SMART:SM00774	EnsemblPlantsGene:SORBI_3003G337900	SUPFAM:SSF118290	unigene:Sbi.8065	UniParc:UPI0001A846EE	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	RefSeq:XP_002456549.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:66104667..66107290

Molecular Weight (calculated)

29638.3 Da

IEP (calculated)

6.340

GRAVY (calculated)

-0.490

Length

277 amino acids

Sequence
(BLAST)

001: MTLDTPAAVV LELMTMGQQS AAHLRDLLRA SSPAASSPHQ ELAAEILRCC GRVIDALRAT TNGRKRKAAA AEYHQDAAAT GGATWSPPPP PPGPPLKRRA
101: RGAEATREVT SGTTVDGFIW RKYGQKDING HKHPRLYYRC AHKDQGCNAT RRVQQTQDQP AAYEIAYYGD HTCKGAATAW QQLGAAPAVV DFGSNSWGSA
201: DANNNGGSPA ASMSQGGWSP SASSEVGFDF EALHEWHDTA APDPVMEFLD GCFGWESVLQ DSSDFGGLLL HDIATFQ

Best Arabidopsis Sequence Match ( AT1G80590.1 )
(BLAST)

001: MSLEIDAKAV SALLLGQGCA NNLKTLLKNH ETGSVSTEPL INSILDSFSF ALSSQNIPRH VSQRSSKKKM CGIQGMEDSP TPAHIDGFIW RKYGQKTIKT
101: SPHQRWYYRC AYAKDQNCDA TKRVQKIQDN PPVYRNTYVG QHACEAPAYA VNNGGTYGSK MIKFDYVIPE SVMPQPLSID SQEITMEDKD TDDHILNYIN
201: EHLMEDEAYD VFPDVLGERC CFGLEPFPGL NINKS

Arabidopsis Description

WRKY66Probable WRKY transcription factor 66 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8M6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.