Factsheet for PGSC0003DMT400053122

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56400.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g095770.2.1	Tomato	nucleus	91.7	93.04
PGSC0003DMT400070939	Potato	nucleus	42.96	53.36
PGSC0003DMT400021625	Potato	nucleus	25.27	32.11
VIT_13s0067g03140.t01	Wine grape	nucleus	35.38	31.31
KRH64216	Soybean	nucleus	35.74	31.23
KRH16921	Soybean	nucleus	25.99	30.0
KRH53716	Soybean	nucleus	34.3	29.78
KRH16920	Soybean	nucleus	31.77	29.04
KRH16918	Soybean	nucleus	34.3	28.88
PGSC0003DMT400075091	Potato	nucleus	30.32	28.67
TraesCS7B01G249700.1	Wheat	nucleus	21.66	21.9
PGSC0003DMT400051194	Potato	nucleus	21.66	20.69
CDX72140	Canola	nucleus	20.58	20.65
EES01669	Sorghum	nucleus	20.58	20.58
Bra007243.1-P	Field mustard	nucleus	20.22	20.29
CDY27218	Canola	nucleus	20.22	20.29
TraesCS7D01G345700.1	Wheat	nucleus	21.66	20.13
AT3G56400.1	Thale cress	nucleus	21.3	20.07
HORVU0Hr1G030830.1	Barley	nucleus, plastid	20.22	20.0
Bra014692.1-P	Field mustard	nucleus	20.22	19.65
CDX75992	Canola	nucleus	20.22	19.65
Os01t0821600-01	Rice	nucleus	19.49	19.29
PGSC0003DMT400046351	Potato	nucleus	20.94	19.27
Zm00001d043060_P001	Maize	nucleus	19.86	19.23
CDY66845	Canola	nucleus	19.86	19.16
HORVU7Hr1G083270.2	Barley	nucleus	21.3	19.16
TraesCS2D01G489700.1	Wheat	nucleus	20.22	19.11
Bra003239.1-P	Field mustard	nucleus	19.49	19.08
TraesCS2A01G489500.1	Wheat	nucleus	20.22	19.05
Os05t0478800-00	Rice	nucleus	15.16	18.83
TraesCS3D01G337600.1	Wheat	nucleus	18.41	18.82
TraesCS1D01G300700.1	Wheat	nucleus	20.58	18.81
CDX67645	Canola	nucleus	19.13	18.73
TraesCS3B01G375800.1	Wheat	nucleus	18.05	18.59
Zm00001d012505_P001	Maize	nucleus	17.69	18.56
TraesCS2B01G517400.1	Wheat	nucleus	19.86	18.52
PGSC0003DMT400000599	Potato	nucleus	23.1	18.5
TraesCS1A01G301100.1	Wheat	plastid	20.22	18.48
TraesCS1A01G300900.1	Wheat	nucleus	20.58	18.45
CDY32013	Canola	nucleus	18.77	18.37
PGSC0003DMT400084227	Potato	nucleus	19.49	18.37
TraesCS3A01G343900.1	Wheat	nucleus	18.05	18.32
HORVU2Hr1G109330.1	Barley	mitochondrion, nucleus, vacuole	21.3	18.15
Os05t0322900-01	Rice	nucleus	21.3	18.1
TraesCS3A01G343700.1	Wheat	nucleus	17.69	18.01
TraesCS3B01G375700.1	Wheat	nucleus	17.69	18.01
HORVU1Hr1G069620.7	Barley	nucleus	19.49	18.0
PGSC0003DMT400031695	Potato	nucleus	22.02	17.99
EES15768	Sorghum	nucleus	21.66	17.96
HORVU3Hr1G080980.1	Barley	nucleus	15.88	17.96
Bra016974.1-P	Field mustard	nucleus	21.3	17.88
CDY14738	Canola	nucleus	21.3	17.88
HORVU4Hr1G050320.2	Barley	nucleus	19.13	17.79
TraesCS3D01G337500.1	Wheat	nucleus	17.33	17.78
CDY22474	Canola	nucleus	21.66	17.65
TraesCS1D01G300300.1	Wheat	nucleus	19.49	17.59
TraesCS1D01G300500.1	Wheat	plastid	19.49	17.59
CDY06967	Canola	nucleus	20.94	17.58
TraesCS2A01G043600.1	Wheat	nucleus	17.33	17.33
PGSC0003DMT400084214	Potato	nucleus	20.58	17.22
Bra004586.1-P	Field mustard	nucleus	20.94	17.11
TraesCS2B01G056300.1	Wheat	nucleus	17.33	17.08
Bra000203.1-P	Field mustard	nucleus	20.94	17.06
CDY35441	Canola	nucleus	20.94	17.06
TraesCS4D01G172200.1	Wheat	nucleus	18.41	17.06
AT2G40750.1	Thale cress	nucleus	21.3	17.05
GSMUA_Achr5P07490_001	Banana	endoplasmic reticulum	20.58	17.01
PGSC0003DMT400014949	Potato	nucleus	22.02	16.94
CDX79972	Canola	nucleus	20.58	16.91
CDY23883	Canola	nucleus	20.58	16.81
Os05t0478400-00	Rice	nucleus	21.66	16.76
Zm00001d010617_P001	Maize	nucleus	19.13	16.72
TraesCS2D01G104600.1	Wheat	nucleus	20.22	16.67
TraesCS7A01G338500.1	Wheat	nucleus, plastid	22.02	16.62
TraesCS4B01G170100.1	Wheat	nucleus	18.05	16.56
TraesCS2A01G043700.1	Wheat	nucleus	16.25	16.54
TraesCS2D01G042700.1	Wheat	nucleus	17.33	16.38
TraesCS2A01G104900.1	Wheat	nucleus	19.86	16.32
TraesCS2B01G056400.1	Wheat	nucleus, plastid	16.97	16.32
PGSC0003DMT400023502	Potato	nucleus	20.94	16.29
Zm00001d047523_P001	Maize	nucleus	18.77	16.0
Zm00001d022437_P001	Maize	mitochondrion, nucleus	19.49	15.98
Os07t0680400-01	Rice	nucleus	19.13	15.92
TraesCS2D01G104700.1	Wheat	nucleus	19.86	15.9
HORVU2Hr1G006600.1	Barley	nucleus	18.41	15.89
HORVU3Hr1G081030.3	Barley	nucleus	18.05	15.62
TraesCS2A01G043800.1	Wheat	nucleus	16.61	15.54
Zm00001d023615_P001	Maize	plastid	21.3	15.49
Zm00001d023616_P001	Maize	plastid	21.3	15.49
EER99917	Sorghum	mitochondrion, nucleus	19.49	15.25
HORVU2Hr1G017740.3	Barley	nucleus	18.77	14.94
Os03t0335200-01	Rice	nucleus	16.97	14.92
EER94905	Sorghum	nucleus	17.33	14.63
TraesCS4A01G135000.1	Wheat	nucleus	13.36	14.57
TraesCS2B01G121900.1	Wheat	nucleus	19.49	14.21
PGSC0003DMT400022638	Potato	nucleus	17.33	13.83
TraesCS2B01G121800.1	Wheat	nucleus	16.97	13.54
TraesCS2D01G104500.1	Wheat	nucleus	16.97	13.39
TraesCS2A01G104800.1	Wheat	nucleus	16.61	13.14
HORVU2Hr1G017720.1	Barley	nucleus, plastid	16.97	12.77
HORVU7Hr1G075960.1	Barley	nucleus, plastid	13.36	12.63

Protein Annotations

EntrezGene:102581335	MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1BUF3	PFAM:PF03106
EnsemblPlantsGene:PGSC0003DMG400020608	PGSC:PGSC0003DMG400020608	EnsemblPlants:PGSC0003DMT400053122	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF17
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000295E3E6	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_006356477.1
SEG:seg	:	:	:	:	:

Description

DNA-binding protein 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400020608]

Coordinates

chr3:-:35902713..35905193

Molecular Weight (calculated)

31894.2 Da

IEP (calculated)

6.599

GRAVY (calculated)

-0.948

Length

277 amino acids

Sequence
(BLAST)

001: MEEFLGENPH KRLIKELVEG KIFAVQLQSL LKQPNESVLA DELIRKIWGS FTQAITELNS LGNSDNSLTQ SQIEEVDQPN SGSGLKKKKK EKQDRRGCYK
101: RRKTSGSWMR ESETMNDGCA WRKYGQKKIL NSKYPRCYYR CTHKYDQECR ATKQVQIIQE NPIKMYHTTY FGNHTCNSTK IPKHTYNSQF NHAMVKHSDS
201: TVLKEEEEEE EESKGQSDNA SSIVDSNLWQ DFMPSSPSAH DSTLTANYNA AYYEGVISSH DMEDLAKFGE IEAIEFC

Best Arabidopsis Sequence Match ( AT3G56400.1 )
(BLAST)

001: MDTNKAKKLK VMNQLVEGHD LTTQLQQLLS QPGSGLEDLV AKILVCFNNT ISVLDTFEPI SSSSSLAAVE GSQNASCDND GKFEDSGDSR KRLGPVKGKR
101: GCYKRKKRSE TCTIESTILE DAFSWRKYGQ KEILNAKFPR SYFRCTHKYT QGCKATKQVQ KVELEPKMFS ITYIGNHTCN TNAETPKSKT CDHHDEIFMD
201: SEDHKSPSLS TSMKEEDNPH RHHGSSTEND LSLVWPEMVF EEDYHHQASY VNGKTSTSID VLGSQDLMVF GGGGDFEFSE NEHFSIFSSC SNLS

Arabidopsis Description

WRKY70Probable WRKY transcription factor 70 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY00]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.