Factsheet for PGSC0003DMT400070939

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56400.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053122	Potato	nucleus	53.36	42.96
PGSC0003DMT400021625	Potato	nucleus	31.84	32.57
VIT_13s0067g03140.t01	Wine grape	nucleus	43.95	31.31
KRH53716	Soybean	nucleus	40.81	28.53
KRH64216	Soybean	nucleus	40.36	28.39
KRH16921	Soybean	nucleus	30.49	28.33
KRH16920	Soybean	nucleus	38.12	28.05
KRH16918	Soybean	nucleus	40.81	27.66
PGSC0003DMT400075091	Potato	nucleus	34.53	26.28
TraesCS7B01G249700.1	Wheat	nucleus	25.11	20.44
TraesCS3B01G375700.1	Wheat	nucleus	24.66	20.22
EES01669	Sorghum	nucleus	25.11	20.22
TraesCS1A01G300900.1	Wheat	nucleus	27.8	20.06
HORVU3Hr1G080980.1	Barley	nucleus	21.97	20.0
HORVU0Hr1G030830.1	Barley	nucleus, plastid	25.11	20.0
TraesCS3A01G343700.1	Wheat	nucleus	24.22	19.85
HORVU4Hr1G050320.2	Barley	nucleus	26.46	19.8
TraesCS3B01G375800.1	Wheat	nucleus	23.77	19.7
PGSC0003DMT400051194	Potato	nucleus	25.56	19.66
TraesCS3D01G337500.1	Wheat	nucleus	23.77	19.63
TraesCS3D01G337600.1	Wheat	nucleus	23.77	19.56
TraesCS1D01G300500.1	Wheat	plastid	26.91	19.54
TraesCS7D01G345700.1	Wheat	nucleus	26.01	19.46
TraesCS3A01G343900.1	Wheat	nucleus	23.77	19.41
Zm00001d043060_P001	Maize	nucleus	24.66	19.23
CDX72140	Canola	nucleus	23.77	19.2
TraesCS2A01G043700.1	Wheat	nucleus	23.32	19.12
PGSC0003DMT400084227	Potato	nucleus	25.11	19.05
AT3G56400.1	Thale cress	nucleus	25.11	19.05
Zm00001d012505_P001	Maize	nucleus	22.42	18.94
TraesCS4B01G170100.1	Wheat	nucleus	25.56	18.87
TraesCS2D01G489700.1	Wheat	nucleus	24.66	18.77
TraesCS4D01G172200.1	Wheat	nucleus	25.11	18.73
Bra003239.1-P	Field mustard	nucleus	23.77	18.73
TraesCS2A01G489500.1	Wheat	nucleus	24.66	18.71
PGSC0003DMT400046351	Potato	nucleus	25.11	18.6
Bra014692.1-P	Field mustard	nucleus	23.77	18.6
CDX75992	Canola	nucleus	23.77	18.6
TraesCS2B01G517400.1	Wheat	nucleus	24.66	18.52
HORVU7Hr1G083270.2	Barley	nucleus	25.56	18.51
CDY27218	Canola	nucleus	22.87	18.48
Bra007243.1-P	Field mustard	nucleus	22.87	18.48
CDY66845	Canola	nucleus	23.77	18.47
HORVU2Hr1G109330.1	Barley	mitochondrion, nucleus, vacuole	26.91	18.46
Os05t0322900-01	Rice	nucleus	26.91	18.4
CDX67645	Canola	nucleus	23.32	18.37
EES15768	Sorghum	nucleus	27.35	18.26
TraesCS1D01G300300.1	Wheat	nucleus	25.11	18.24
CDY22474	Canola	nucleus	27.8	18.24
TraesCS1D01G300700.1	Wheat	nucleus	24.66	18.15
CDX79972	Canola	nucleus	27.35	18.1
CDY32013	Canola	nucleus	22.87	18.02
HORVU1Hr1G069620.7	Barley	nucleus	24.22	18.0
CDY23883	Canola	nucleus	27.35	17.99
Os05t0478800-00	Rice	nucleus	17.94	17.94
PGSC0003DMT400084214	Potato	nucleus	26.46	17.82
TraesCS1A01G301100.1	Wheat	plastid	24.22	17.82
TraesCS2B01G056300.1	Wheat	nucleus	22.42	17.79
TraesCS2B01G056400.1	Wheat	nucleus, plastid	22.87	17.71
Bra004586.1-P	Field mustard	nucleus	26.91	17.7
Bra000203.1-P	Field mustard	nucleus	26.91	17.65
CDY35441	Canola	nucleus	26.91	17.65
PGSC0003DMT400000599	Potato	nucleus	27.35	17.63
Os01t0821600-01	Rice	nucleus	21.97	17.5
PGSC0003DMT400031695	Potato	nucleus	26.46	17.4
TraesCS2A01G043600.1	Wheat	nucleus	21.52	17.33
Os05t0478400-00	Rice	nucleus	27.8	17.32
CDY14738	Canola	nucleus	25.56	17.27
Zm00001d010617_P001	Maize	nucleus	24.22	17.03
Bra016974.1-P	Field mustard	nucleus	25.11	16.97
CDY06967	Canola	nucleus	25.11	16.97
PGSC0003DMT400014949	Potato	nucleus	27.35	16.94
TraesCS4A01G135000.1	Wheat	nucleus	19.28	16.93
Os07t0680400-01	Rice	nucleus	25.11	16.82
TraesCS2D01G042700.1	Wheat	nucleus	21.97	16.72
PGSC0003DMT400023502	Potato	nucleus	26.46	16.57
HORVU3Hr1G081030.3	Barley	nucleus	23.77	16.56
EER94905	Sorghum	nucleus	24.22	16.46
GSMUA_Achr5P07490_001	Banana	endoplasmic reticulum	24.66	16.42
HORVU2Hr1G006600.1	Barley	nucleus	22.87	15.89
TraesCS2A01G043800.1	Wheat	nucleus	21.08	15.88
Os03t0335200-01	Rice	nucleus	22.42	15.87
TraesCS7A01G338500.1	Wheat	nucleus, plastid	26.01	15.8
TraesCS2D01G104600.1	Wheat	nucleus	23.77	15.77
Zm00001d023616_P001	Maize	plastid	26.91	15.75
Zm00001d023615_P001	Maize	plastid	26.91	15.75
Zm00001d022437_P001	Maize	mitochondrion, nucleus	23.77	15.68
TraesCS2D01G104700.1	Wheat	nucleus	24.22	15.61
AT2G40750.1	Thale cress	nucleus	24.22	15.61
EER99917	Sorghum	mitochondrion, nucleus	24.66	15.54
TraesCS2A01G104900.1	Wheat	nucleus	23.32	15.43
Zm00001d047523_P001	Maize	nucleus	22.42	15.38
HORVU2Hr1G017740.3	Barley	nucleus	23.77	15.23
TraesCS2D01G104500.1	Wheat	nucleus	22.87	14.53
TraesCS2B01G121800.1	Wheat	nucleus	21.97	14.12
TraesCS2A01G104800.1	Wheat	nucleus	21.97	14.0
PGSC0003DMT400022638	Potato	nucleus	21.52	13.83
TraesCS2B01G121900.1	Wheat	nucleus	23.32	13.68
HORVU2Hr1G017720.1	Barley	nucleus, plastid	22.42	13.59
HORVU7Hr1G075960.1	Barley	nucleus, plastid	17.49	13.31

Protein Annotations

EntrezGene:107062571	MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1CMZ7	PFAM:PF03106
EnsemblPlantsGene:PGSC0003DMG400027582	PGSC:PGSC0003DMG400027582	EnsemblPlants:PGSC0003DMT400070939	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF37
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000295892A	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_015168844.1

Description

DNA-binding protein 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400027582]

Coordinates

chr6:-:35013158..35015395

Molecular Weight (calculated)

26025.8 Da

IEP (calculated)

8.016

GRAVY (calculated)

-0.705

Length

223 amino acids

Sequence
(BLAST)

001: MVKEHLEQGK EFAVQLQSLL QQPLAHHNKS VSPHDLILKI LTCFTKALSS VTGSKDFSSE FRLKDKQIVK NRRGCYGRKR KALDSWTRET TITEDGHAWR
101: KYGQKVILNS KYPRCYYRCS HKYDQECYAT KQVERIKEEE PIIYRTTYFG HHVCKRPQIM ITTSREESKL QHSCDKSCAL DWQDLIPDFS LEGVVSSYND
201: LNGLDMDNVG EFGDFHFEAL EFS

Best Arabidopsis Sequence Match ( AT3G56400.1 )
(BLAST)

001: MDTNKAKKLK VMNQLVEGHD LTTQLQQLLS QPGSGLEDLV AKILVCFNNT ISVLDTFEPI SSSSSLAAVE GSQNASCDND GKFEDSGDSR KRLGPVKGKR
101: GCYKRKKRSE TCTIESTILE DAFSWRKYGQ KEILNAKFPR SYFRCTHKYT QGCKATKQVQ KVELEPKMFS ITYIGNHTCN TNAETPKSKT CDHHDEIFMD
201: SEDHKSPSLS TSMKEEDNPH RHHGSSTEND LSLVWPEMVF EEDYHHQASY VNGKTSTSID VLGSQDLMVF GGGGDFEFSE NEHFSIFSSC SNLS

Arabidopsis Description

WRKY70Probable WRKY transcription factor 70 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY00]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.