Factsheet for PGSC0003DMT400075091

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56400.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT3G56400.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g015770.2.1	Tomato	extracellular, nucleus	93.17	93.81
PGSC0003DMT400021625	Potato	nucleus	40.61	54.59
PGSC0003DMT400070939	Potato	nucleus	26.28	34.53
KRH21928	Soybean	nucleus	31.4	34.07
KRH21926	Soybean	nucleus	32.76	32.43
KRH21925	Soybean	nucleus	31.74	31.63
KRH21927	Soybean	nucleus	31.06	30.33
PGSC0003DMT400053122	Potato	nucleus	28.67	30.32
TraesCS7B01G249700.1	Wheat	nucleus	23.21	24.82
TraesCS7D01G345700.1	Wheat	nucleus	23.89	23.49
HORVU4Hr1G050320.2	Barley	nucleus	23.89	23.49
TraesCS4D01G172200.1	Wheat	nucleus	23.89	23.41
TraesCS4B01G170100.1	Wheat	nucleus	23.89	23.18
HORVU7Hr1G083270.2	Barley	nucleus	22.87	21.75
TraesCS4A01G135000.1	Wheat	nucleus	18.09	20.87
Os05t0322900-01	Rice	nucleus	23.21	20.86
TraesCS2A01G489500.1	Wheat	nucleus	20.82	20.75
EES15768	Sorghum	nucleus	23.55	20.66
PGSC0003DMT400051194	Potato	nucleus	20.14	20.34
TraesCS2D01G489700.1	Wheat	nucleus	20.14	20.14
TraesCS1A01G300900.1	Wheat	nucleus	20.82	19.74
PGSC0003DMT400000599	Potato	nucleus	23.21	19.65
HORVU0Hr1G030830.1	Barley	nucleus, plastid	18.77	19.64
TraesCS2B01G517400.1	Wheat	nucleus	19.8	19.53
GSMUA_Achr5P07490_001	Banana	endoplasmic reticulum	22.18	19.4
TraesCS7A01G338500.1	Wheat	nucleus, plastid	24.23	19.35
Os05t0478800-00	Rice	nucleus	14.33	18.83
TraesCS2A01G104900.1	Wheat	nucleus	21.5	18.69
Zm00001d022437_P001	Maize	mitochondrion, nucleus	21.5	18.64
PGSC0003DMT400014949	Potato	nucleus	22.87	18.61
CDX75992	Canola	nucleus	18.09	18.6
Bra014692.1-P	Field mustard	nucleus	18.09	18.6
PGSC0003DMT400031695	Potato	nucleus	21.5	18.58
TraesCS1D01G300500.1	Wheat	plastid	19.45	18.57
TraesCS2D01G104700.1	Wheat	nucleus	21.84	18.5
CDY27218	Canola	nucleus	17.41	18.48
Bra007243.1-P	Field mustard	nucleus	17.41	18.48
TraesCS2D01G104600.1	Wheat	nucleus	21.16	18.45
CDX67645	Canola	nucleus	17.75	18.37
Bra003239.1-P	Field mustard	nucleus	17.75	18.37
Zm00001d023616_P001	Maize	plastid	23.89	18.37
Zm00001d023615_P001	Maize	plastid	23.89	18.37
HORVU1Hr1G069620.7	Barley	nucleus	18.77	18.33
PGSC0003DMT400046351	Potato	nucleus	18.77	18.27
TraesCS2B01G056300.1	Wheat	nucleus	17.41	18.15
CDY66845	Canola	nucleus	17.75	18.12
TraesCS2A01G043600.1	Wheat	nucleus	17.06	18.05
AT3G56400.1	Thale cress	nucleus	18.09	18.03
CDY32013	Canola	nucleus	17.41	18.02
Os01t0821600-01	Rice	nucleus	17.06	17.86
TraesCS1D01G300700.1	Wheat	nucleus	18.43	17.82
CDX72140	Canola	nucleus	16.72	17.75
HORVU7Hr1G075960.1	Barley	nucleus, plastid	17.75	17.75
TraesCS2B01G056400.1	Wheat	nucleus, plastid	17.41	17.71
EES01669	Sorghum	nucleus	16.72	17.69
TraesCS2A01G043700.1	Wheat	nucleus	16.38	17.65
TraesCS1D01G300300.1	Wheat	nucleus	18.43	17.59
HORVU2Hr1G017740.3	Barley	nucleus	20.82	17.53
PGSC0003DMT400084214	Potato	nucleus	19.8	17.52
TraesCS1A01G301100.1	Wheat	plastid	18.09	17.49
TraesCS2D01G042700.1	Wheat	nucleus	17.41	17.41
EER94905	Sorghum	nucleus	19.45	17.38
CDY22474	Canola	nucleus	20.14	17.35
PGSC0003DMT400084227	Potato	nucleus	17.41	17.35
CDY14738	Canola	nucleus	19.45	17.27
HORVU2Hr1G109330.1	Barley	mitochondrion, nucleus, vacuole	19.11	17.23
HORVU3Hr1G080980.1	Barley	nucleus	14.33	17.14
Os07t0680400-01	Rice	nucleus	19.45	17.12
TraesCS2B01G121900.1	Wheat	nucleus	22.18	17.11
TraesCS2D01G104500.1	Wheat	nucleus	20.48	17.09
Bra000203.1-P	Field mustard	nucleus	19.8	17.06
CDY35441	Canola	nucleus	19.8	17.06
CDX79972	Canola	nucleus	19.45	16.91
CDY23883	Canola	nucleus	19.45	16.81
Bra004586.1-P	Field mustard	nucleus	19.45	16.81
TraesCS2B01G121800.1	Wheat	nucleus	19.8	16.71
Bra016974.1-P	Field mustard	nucleus	18.77	16.67
CDY06967	Canola	nucleus	18.77	16.67
EER99917	Sorghum	mitochondrion, nucleus	20.14	16.67
Zm00001d047523_P001	Maize	nucleus	18.43	16.62
TraesCS2A01G043800.1	Wheat	nucleus	16.72	16.55
TraesCS3A01G343700.1	Wheat	nucleus	15.36	16.54
TraesCS3A01G343900.1	Wheat	nucleus	15.36	16.48
AT2G40750.1	Thale cress	nucleus	19.45	16.47
TraesCS3B01G375800.1	Wheat	nucleus	15.02	16.36
TraesCS3D01G337500.1	Wheat	nucleus	15.02	16.3
TraesCS2A01G104800.1	Wheat	nucleus	19.45	16.29
TraesCS3D01G337600.1	Wheat	nucleus	15.02	16.24
Os03t0335200-01	Rice	nucleus	17.41	16.19
TraesCS3B01G375700.1	Wheat	nucleus	15.02	16.18
Zm00001d043060_P001	Maize	nucleus	15.7	16.08
Os05t0478400-00	Rice	nucleus	19.45	15.92
Zm00001d012505_P001	Maize	nucleus	14.33	15.91
Zm00001d010617_P001	Maize	nucleus	17.06	15.77
HORVU2Hr1G017720.1	Barley	nucleus, plastid	19.45	15.49
PGSC0003DMT400023502	Potato	nucleus	18.43	15.17
HORVU2Hr1G006600.1	Barley	nucleus	16.38	14.95
PGSC0003DMT400022638	Potato	nucleus	17.06	14.41
HORVU3Hr1G081030.3	Barley	nucleus	15.36	14.06

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:ABU49725	ProteinID:ABU49725.1	EMBL:EU056918	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
UniProt:M1CUN1	PFAM:PF03106	EnsemblPlantsGene:PGSC0003DMG400029207	PGSC:PGSC0003DMG400029207	EnsemblPlants:PGSC0003DMT400075091	PFscan:PS50811
PANTHER:PTHR31282	PANTHER:PTHR31282:SF37	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000294E04C	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	:	:	:	:	:

Description

WRKY transcription factor 6 [Source:PGSC_GENE;Acc:PGSC0003DMG400029207]

Coordinates

chr9:-:18826014..18827752

Molecular Weight (calculated)

33465.8 Da

IEP (calculated)

5.838

GRAVY (calculated)

-0.767

Length

293 amino acids

Sequence
(BLAST)

001: MDNSSTDLNR AIEGLIRGRE FTRRLKEIIK KPLVVGGEVA NIMAEELVAK IMESFSETLS VINNSDVIIT TPVEVKSPED YSSGSCKSSD RRGCYKRRKT
101: SESNIKESSD LVDDGHAWRK YGQKQILNST YPRHYFRCTH KYDQKCQASK QVQKIQDNPQ RFRTTYYGHH TCKAFPRVSQ IILDSPMDGN SNYISFDQNH
201: TFPSIKQETK EEVVFGFYPK IEDQIQSSSS DYFLPNDHDH DHLTPATFEA SGSRMTSPDV MSSGVYSSCT TTSNDNLEID IDFEEGLWNF DQV

Best Arabidopsis Sequence Match ( AT3G56400.1 )
(BLAST)

001: MDTNKAKKLK VMNQLVEGHD LTTQLQQLLS QPGSGLEDLV AKILVCFNNT ISVLDTFEPI SSSSSLAAVE GSQNASCDND GKFEDSGDSR KRLGPVKGKR
101: GCYKRKKRSE TCTIESTILE DAFSWRKYGQ KEILNAKFPR SYFRCTHKYT QGCKATKQVQ KVELEPKMFS ITYIGNHTCN TNAETPKSKT CDHHDEIFMD
201: SEDHKSPSLS TSMKEEDNPH RHHGSSTEND LSLVWPEMVF EEDYHHQASY VNGKTSTSID VLGSQDLMVF GGGGDFEFSE NEHFSIFSSC SNLS

Arabidopsis Description

WRKY70Probable WRKY transcription factor 70 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY00]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.