CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022437_P001	Maize	mitochondrion, nucleus	72.88	76.33
Os07t0680400-01	Rice	nucleus	51.13	54.35
TraesCS2D01G104700.1	Wheat	nucleus	50.85	52.02
TraesCS2A01G104900.1	Wheat	nucleus	49.44	51.93
HORVU2Hr1G017740.3	Barley	nucleus	50.0	50.86
TraesCS2D01G104600.1	Wheat	nucleus	48.02	50.6
TraesCS2A01G104800.1	Wheat	nucleus	47.46	48.0
TraesCS2D01G104500.1	Wheat	nucleus	47.18	47.58
TraesCS2B01G121800.1	Wheat	nucleus	46.61	47.55
TraesCS2B01G121900.1	Wheat	nucleus	49.44	46.05
HORVU7Hr1G075960.1	Barley	nucleus, plastid	37.85	45.73
HORVU2Hr1G017720.1	Barley	nucleus, plastid	46.61	44.84
EER94905	Sorghum	nucleus	34.46	37.2
EES15768	Sorghum	nucleus	25.14	26.65
PGSC0003DMT400021625	Potato	nucleus	15.82	25.69
OQU82729	Sorghum	nucleus	16.38	25.55
PGSC0003DMT400070939	Potato	nucleus	15.54	24.66
OQU78676	Sorghum	nucleus	15.54	24.44
EER96589	Sorghum	nucleus	21.19	24.19
KRH16921	Soybean	nucleus	15.82	23.33
EER94940	Sorghum	nucleus	14.69	23.11
GSMUA_Achr5P07490_001	Banana	endoplasmic reticulum	20.62	21.79
EES01669	Sorghum	nucleus	16.67	21.3
KRH53716	Soybean	nucleus	18.64	20.69
KRH64216	Soybean	nucleus	18.36	20.5
VIT_13s0067g03140.t01	Wine grape	nucleus	18.08	20.45
Solyc09g015770.2.1	Tomato	extracellular, nucleus	16.67	20.27
PGSC0003DMT400075091	Potato	nucleus	16.67	20.14
KRH00435	Soybean	nucleus	16.95	20.07
Solyc03g095770.2.1	Tomato	nucleus	15.25	19.78
CDX75992	Canola	nucleus	15.82	19.65
Bra014692.1-P	Field mustard	nucleus	15.82	19.65
KRH09521	Soybean	nucleus	14.69	19.62
PGSC0003DMT400053122	Potato	nucleus	15.25	19.49
EES01666	Sorghum	nucleus	12.99	19.49
KRH16920	Soybean	nucleus	16.67	19.47
CDY32013	Canola	nucleus	15.54	19.43
AT3G56400.1	Thale cress	nucleus	16.1	19.39
EES03370	Sorghum	nucleus	18.93	19.36
KRH40720	Soybean	nucleus	16.38	19.33
KRH21928	Soybean	nucleus	14.69	19.26
CDY27218	Canola	nucleus	14.97	19.2
Bra007243.1-P	Field mustard	nucleus	14.97	19.2
EES18716	Sorghum	nucleus	14.69	19.12
Bra003239.1-P	Field mustard	nucleus	15.25	19.08
CDX67645	Canola	nucleus	15.25	19.08
EER96590	Sorghum	nucleus	17.51	18.9
CDX72140	Canola	nucleus	14.69	18.84
CDY66845	Canola	nucleus	15.25	18.82
KRH21926	Soybean	nucleus	15.54	18.58
OQU88981	Sorghum	plastid	14.41	18.55
OQU80381	Sorghum	nucleus	17.8	18.53
KRH21925	Soybean	nucleus	15.25	18.37
KRH21927	Soybean	nucleus	15.25	18.0
KRH16918	Soybean	nucleus	16.38	17.63
EER87882	Sorghum	nucleus	18.64	17.46
EES01667	Sorghum	nucleus	12.99	17.42
EES03804	Sorghum	nucleus	16.1	17.12
VIT_08s0058g01390.t01	Wine grape	nucleus	16.95	16.81
CDY22474	Canola	nucleus	16.1	16.76
AT2G40750.1	Thale cress	nucleus	16.38	16.76
KRH64882	Soybean	nucleus	11.02	16.6
CDY35441	Canola	nucleus	15.82	16.47
Bra000203.1-P	Field mustard	nucleus	15.82	16.47
CDY14738	Canola	nucleus	15.25	16.36
Bra016974.1-P	Field mustard	nucleus	14.97	16.06
CDY06967	Canola	nucleus	14.97	16.06
CDX79972	Canola	nucleus	15.25	16.02
CDY23883	Canola	nucleus	15.25	15.93
Bra004586.1-P	Field mustard	nucleus	14.97	15.63
OQU77713	Sorghum	nucleus	16.67	15.61
OQU82725	Sorghum	nucleus	14.69	15.57
EES19695	Sorghum	nucleus	9.6	14.47
EES09135	Sorghum	nucleus	14.69	14.4
EES01668	Sorghum	nucleus	14.12	13.26

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8074454	UniProt:C5X5M4	EnsemblPlants:EER99917	ProteinID:EER99917
ProteinID:EER99917.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF19
SMART:SM00774	EnsemblPlantsGene:SORBI_3002G418500	SUPFAM:SSF118290	unigene:Sbi.6729	UniParc:UPI0001A84859	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	RefSeq:XP_002463396.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:76629585..76632298

Molecular Weight (calculated)

37060.4 Da

IEP (calculated)

9.060

GRAVY (calculated)

-0.441

Length

354 amino acids

Sequence
(BLAST)

001: MASSAGGGGR RSPPATAAPR MVMDRLMEVH EGATKLQTML QESPTPSIAA AAGTTSELRL TIDRMLSSLS SAMSAWNTTG AAQGPGQGRR RRRGEAAAGS
101: GPQRRSSTRR RSHSPFVKMV TTSKLDDGKA WRKYGQKRIH ESPNPRSYYR CTHRPEQRCM ATRQVQASDA NPSEFIISYY GQHTCQDPST IPLVIPDTAP
201: PPDCANLISF GGCTTIAAGA SSSSTTTTAV PPQQALSFDP TTTPMLMLSR FGYSSSLPAA QAQQDYRCGS EEVLSSRSSP AAQLATMVVG SAGTMASSST
301: VGSAPAEYWP GGTSGMACGP GSFPSSPSSL GFMTGSPFGS FGNAGDDDLF GFDP

Best Arabidopsis Sequence Match ( AT2G46400.1 )
(BLAST)

001: MMMEEKLVIN ELELGKELAN RLMNNLKHTS SVDSNKTLIS DILRIYQNAI FMLSFNQDKN ILKRSLEIDG KDSKNVFKKR KVSEKNTEKV KVFVATEQEN
101: GSIDDGHCWR KYGQKEIHGS KNPRAYYRCT HRFTQDCLAV KQVQKSDTDP SLFEVKYLGN HTCNNITSPK TTTNFSVSLT NTNIFEGNRV HVTEQSEDMK
201: PTKSEEVMIS LEDLENKKNI FRTFSFSNHE IENGVWKSNL FLGNFVEDLS PATSGSAITS EVLSAPAAVE NSETADSYFS SLDNIIDFGQ DWLWS

Arabidopsis Description

WRKY46Probable WRKY transcription factor 46 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.