CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043063_P001	Maize	nucleus	85.98	86.31
TraesCS3B01G375300.1	Wheat	nucleus	57.95	57.74
TraesCS3A01G343100.1	Wheat	nucleus	57.95	57.74
TraesCS3D01G337100.1	Wheat	nucleus	56.06	55.43
Os01t0820700-00	Rice	nucleus	58.71	54.77
HORVU3Hr1G080890.1	Barley	nucleus, plastid, vacuole	50.76	45.58
OQU78676	Sorghum	nucleus	18.18	21.33
OQU82729	Sorghum	nucleus	18.18	21.15
EES01666	Sorghum	nucleus	18.56	20.76
EER94940	Sorghum	nucleus	17.42	20.44
EES18716	Sorghum	nucleus	19.7	19.12
EES19695	Sorghum	nucleus	16.29	18.3
EES01669	Sorghum	nucleus	18.56	17.69
OQU88981	Sorghum	plastid	17.42	16.73
EER96590	Sorghum	nucleus	20.08	16.16
EES03370	Sorghum	nucleus	20.83	15.9
EES03804	Sorghum	nucleus	19.32	15.32
OQU80381	Sorghum	nucleus	19.7	15.29
EER96589	Sorghum	nucleus	17.05	14.52
EER87882	Sorghum	nucleus	20.45	14.29
EES15768	Sorghum	nucleus	17.8	14.07
EER94905	Sorghum	nucleus	17.42	14.02
EES01668	Sorghum	nucleus	18.94	13.26
EER99917	Sorghum	mitochondrion, nucleus	17.42	12.99
OQU82725	Sorghum	nucleus	16.29	12.87
OQU77713	Sorghum	nucleus	17.8	12.43
EES09135	Sorghum	nucleus	16.67	12.19

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8057712	UniProt:C5XNA0	EnsemblPlants:EES01667	ProteinID:EES01667
ProteinID:EES01667.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF29
SMART:SM00774	EnsemblPlantsGene:SORBI_3003G337600	SUPFAM:SSF118290	UniParc:UPI0001A846EC	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_002456547.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:66070688..66076206

Molecular Weight (calculated)

29569.9 Da

IEP (calculated)

6.432

GRAVY (calculated)

-0.945

Length

264 amino acids

Sequence
(BLAST)

001: MKREQSFEFG DPSAQDAMGS AASESSYSPP GAVFGLSPPE SASPRSGRHN RRRDRPSWVR LTYTPYFDGH LWRKYGQKKI KDAEYPRLYF RCSYREDRQC
101: LASKLLQQKN GDDPPLYEVT YTYEHTCGAP PVSFPDIVAE PPPAAREGLV LRFDSPGGHG GHARMQQNGH CQQSTSRSPF MMLSFGSRSQ THDQHPAVFR
201: SDLEAGSSSF PTEAPPAPPP PANGDGGDML STLNSFAYDF DNQMHFGDHT YLPHNNSNYD YDDY

Best Arabidopsis Sequence Match ( AT5G22570.1 )
(BLAST)

001: MEMNSPHEKA VQAIRYGHSC AMRLKRRLNH PMADGGPLSS YDLAKSIVES FSNAISILSA KPETEDDQFS DLSSRDSSPP PQGSPSKKRK IDSTNSSENW
101: RDDSPDPIYY DGYLWRKYGQ KSIKKSNHQR SYYRCSYNKD HNCEARKHEQ KIKDNPPVYR TTYFGHHTCK TEHNLDAIFI AGQDPLDDFK STQMIRFGKD
201: QDQEKESRSN GFSLSVKHEE DIIKEQAIDQ YREITSNDQD CQDVIEEYLS SPSGSYPPSS SSGSESADFN SDLLFDNPDS WDRYDQFYF

Arabidopsis Description

WRKY38Probable WRKY transcription factor 38 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWF1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.