CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052357_P001	Maize	nucleus	82.38	82.02
Os11t0116900-01	Rice	nucleus	71.37	72.32
OQU78676	Sorghum	nucleus	71.37	72.0
Os12t0116400-00	Rice	nucleus	69.6	71.17
TraesCS4D01G119700.1	Wheat	nucleus	68.28	69.82
TraesCS4B01G121500.1	Wheat	nucleus	68.28	69.82
TraesCS4A01G193600.1	Wheat	nucleus	68.28	69.82
HORVU4Hr1G022970.2	Barley	nucleus, plastid	68.72	55.91
EER94940	Sorghum	nucleus	37.0	37.33
EES01666	Sorghum	nucleus	23.79	22.88
EES19695	Sorghum	nucleus	20.7	20.0
EER94905	Sorghum	nucleus	27.31	18.9
EES01667	Sorghum	nucleus	21.15	18.18
EER99917	Sorghum	mitochondrion, nucleus	25.55	16.38
OQU82725	Sorghum	nucleus	22.47	15.27
EES15768	Sorghum	nucleus	22.03	14.97
OQU80381	Sorghum	nucleus	22.03	14.71
EES09135	Sorghum	nucleus	23.35	14.68
EER96590	Sorghum	nucleus	21.15	14.63
EER96589	Sorghum	nucleus	19.82	14.52
OQU88981	Sorghum	plastid	17.18	14.18
EES18716	Sorghum	nucleus	16.74	13.97
EES01669	Sorghum	nucleus	16.74	13.72
EES03804	Sorghum	nucleus	19.38	13.21
EER87882	Sorghum	nucleus	20.7	12.43
OQU77713	Sorghum	nucleus	20.26	12.17
EES03370	Sorghum	nucleus	18.5	12.14
EES01668	Sorghum	nucleus	19.82	11.94

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A1Z5RGK4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	ProteinID:OQU82728.1	EnsemblPlants:OQU82729
ProteinID:OQU82729	ProteinID:OQU82729.1	ProteinID:OQU82730.1	ProteinID:OQU82731.1	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31282	PANTHER:PTHR31282:SF7	SMART:SM00774	EnsemblPlantsGene:SORBI_3005G013600	SUPFAM:SSF118290	UniParc:UPI000B423EA9
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:1235265..1241922

Molecular Weight (calculated)

25247.1 Da

IEP (calculated)

8.751

GRAVY (calculated)

-0.765

Length

227 amino acids

Sequence
(BLAST)

001: MALDSVPPYP CDLGSSRAAA AARTQQRIRK DERTWTSDTY APYDDGHQWR KYGEKKLSNS HFPRFYYRCT YKNDMKCPAT KQVQQKDTSD PPLFSVTYFN
101: HHTCSTSSSA IGSARDITSQ SSSKKAVSIC FSPHTASEQP SFLTSPAMPQ STIMHPYSAN QQSDRSAYAY QQLQWTGSVP SHASNGPAKM EVDDSAQPSP
201: SSSSTSALSR TLLPIGQSRC IEYFHFL

Best Arabidopsis Sequence Match ( AT2G40740.1 )
(BLAST)

001: MYSYKKISYQ MEEVMSMIFH GMKLVKSLES SLPEKPPESL LTSLDEIVKT FSDANERLKM LLEIKNSETA LNKTKPVIVS VANQMLMQME PGLMQEYWLR
101: YGGSTSSQGT EAMFQTQLMA VDGGGERNLT AAVERSGASG SSTPRQRRRK DEGEEQTVLV AALRTGNTDL PPDDNHTWRK YGQKEILGSR FPRAYYRCTH
201: QKLYNCPAKK QVQRLNDDPF TFRVTYRGSH TCYNSTAPTA SSATPSTIPI SSVTTGHSVD YGLAVVDMAD VMFGSGGVGT NMDFIFPKND PS

Arabidopsis Description

WRKY55WRKY DNA-binding protein 55 [Source:TAIR;Acc:AT2G40740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.