Factsheet for Zm00001d052357_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82729	Sorghum	nucleus	82.02	82.38
Os11t0116900-01	Rice	nucleus	67.11	68.3
Os12t0116400-00	Rice	nucleus	65.35	67.12
TraesCS4A01G193600.1	Wheat	nucleus	63.16	64.86
TraesCS4B01G121500.1	Wheat	nucleus	63.16	64.86
TraesCS4D01G119700.1	Wheat	nucleus	63.16	64.86
HORVU4Hr1G022970.2	Barley	nucleus, plastid	63.6	51.97
Zm00001d028962_P001	Maize	nucleus	35.96	38.32
Zm00001d021581_P001	Maize	cytosol, mitochondrion, nucleus	15.35	29.91
Zm00001d043066_P001	Maize	nucleus	25.0	23.75
Zm00001d010616_P001	Maize	nucleus, plastid	19.74	19.74
Zm00001d047523_P001	Maize	nucleus	27.19	19.08
Zm00001d012508_P001	Maize	mitochondrion	18.86	18.14
Zm00001d043063_P001	Maize	nucleus	20.18	17.49
Zm00001d005057_P001	Maize	nucleus	25.88	16.86
Zm00001d022437_P001	Maize	mitochondrion, nucleus	24.56	16.57
Zm00001d020136_P001	Maize	nucleus	21.05	15.89
Zm00001d032265_P001	Maize	nucleus	21.93	15.02
Zm00001d050247_P001	Maize	nucleus	21.05	15.0
Zm00001d020137_P001	Maize	nucleus	20.18	14.2
Zm00001d010617_P001	Maize	nucleus	19.74	14.2
Zm00001d052355_P001	Maize	nucleus	22.81	13.9
Zm00001d043062_P001	Maize	nucleus	20.18	13.81
Zm00001d005622_P001	Maize	nucleus	19.74	13.6
Zm00001d009619_P002	Maize	nucleus	16.23	12.46
Zm00001d023615_P001	Maize	plastid	20.61	12.34
Zm00001d023616_P001	Maize	plastid	20.61	12.34
Zm00001d043060_P001	Maize	nucleus	15.35	12.24
Zm00001d011496_P002	Maize	nucleus	17.54	12.23
Zm00001d012507_P001	Maize	nucleus	18.86	12.22
Zm00001d045283_P001	Maize	nucleus	20.61	11.87
Zm00001d012505_P001	Maize	nucleus	13.16	11.36
Zm00001d036244_P001	Maize	nucleus	17.54	10.93
Zm00001d037854_P001	Maize	extracellular	18.42	10.27
Zm00001d044010_P001	Maize	nucleus	14.91	10.15

Protein Annotations

EntrezGene:100192722	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:AQK57039.1	UniProt:B4FCE6	EMBL:BT034784
EMBL:EU953900	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF7
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00017B662B	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	EnsemblPlantsGene:Zm00001d052357
EnsemblPlants:Zm00001d052357_P001	EnsemblPlants:Zm00001d052357_T001	SEG:seg	:	:	:

Description

WRKY-transcription factor 16Probable WRKY transcription factor 30

Coordinates

chr4:-:188104225..188107989

Molecular Weight (calculated)

25242.1 Da

IEP (calculated)

9.437

GRAVY (calculated)

-0.833

Length

228 amino acids

Sequence
(BLAST)

001: MALDSVPPYP SDLGSSRAAA AARTQQRIRK EERTWTSDTY APYDDGHQWR KYGEKKLSNS HFPRFYYRCT YKNDMKCPAT KQVQQKDSSD PPLFSVTYFN
101: QHTCSSSSAL GSARDVASQS SSKKAVSICF SPHAPSEQTS FLTTTTVAPP VMHSYGANRQ PDRSAYNQQP QWWTGGVPSP TSNGPAKMEV AESTQKPSGS
201: YGSTTGNAPS RTLLPIGQSR CIEYFHFL

Best Arabidopsis Sequence Match ( AT2G40740.1 )
(BLAST)

001: MYSYKKISYQ MEEVMSMIFH GMKLVKSLES SLPEKPPESL LTSLDEIVKT FSDANERLKM LLEIKNSETA LNKTKPVIVS VANQMLMQME PGLMQEYWLR
101: YGGSTSSQGT EAMFQTQLMA VDGGGERNLT AAVERSGASG SSTPRQRRRK DEGEEQTVLV AALRTGNTDL PPDDNHTWRK YGQKEILGSR FPRAYYRCTH
201: QKLYNCPAKK QVQRLNDDPF TFRVTYRGSH TCYNSTAPTA SSATPSTIPI SSVTTGHSVD YGLAVVDMAD VMFGSGGVGT NMDFIFPKND PS

Arabidopsis Description

WRKY55WRKY DNA-binding protein 55 [Source:TAIR;Acc:AT2G40740]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.