CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82725	Sorghum	nucleus	76.45	82.63
Zm00001d005057_P001	Maize	nucleus	71.19	73.43
Zm00001d052355_P001	Maize	nucleus	75.07	72.46
EES19695	Sorghum	nucleus	15.79	24.26
OQU82729	Sorghum	nucleus	14.68	23.35
OQU78676	Sorghum	nucleus	14.4	23.11
EES01666	Sorghum	nucleus	14.4	22.03
OQU88981	Sorghum	plastid	16.62	21.82
EER94940	Sorghum	nucleus	13.3	21.33
EES18716	Sorghum	nucleus	14.4	19.12
EES01668	Sorghum	nucleus	19.39	18.57
EER94905	Sorghum	nucleus	16.62	18.29
EES15768	Sorghum	nucleus	16.9	18.26
OQU80381	Sorghum	nucleus	17.17	18.24
EER96589	Sorghum	nucleus	15.51	18.06
EES03804	Sorghum	nucleus	16.62	18.02
EES01669	Sorghum	nucleus	13.02	16.97
EER96590	Sorghum	nucleus	15.24	16.77
EES03370	Sorghum	nucleus	16.07	16.76
EES01667	Sorghum	nucleus	12.19	16.67
EER87882	Sorghum	nucleus	16.9	16.14
OQU77713	Sorghum	nucleus	16.62	15.87
EER99917	Sorghum	mitochondrion, nucleus	14.4	14.69

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8067618	UniProt:C5Y3H4	EnsemblPlants:EES09135	ProteinID:EES09135
ProteinID:EES09135.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF13
SMART:SM00774	EnsemblPlantsGene:SORBI_3005G013500	SUPFAM:SSF118290	UniParc:UPI0001A869AD	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_002450147.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:1224392..1225924

Molecular Weight (calculated)

38962.0 Da

IEP (calculated)

6.767

GRAVY (calculated)

-0.421

Length

361 amino acids

Sequence
(BLAST)

001: MACVGEREAA VREVAQVYEL IKLQQPLLLL HSPQHPPPPS TAKLAQSLLA KALRALNVAL SVMKQQQPVV VVKAEPHQLS PPSPASANSQ VAIVPSTATR
101: GAKRRRSSVA IMEGKKKTSS SSWATVTAVP YDDGYEWRKY GEKKINGTLF TRSYFRCTYK DDAGCLATKH VQQRDDNSDL PMFHVTYNND HTCNRAKAAG
201: IANNGSSSNN LAALLAGCCS NGSGSGSGKG LTTMTTTNAR PTEHAAAAAA MNMMKQEPPL LLPALIDLQQ PSACFPNEQI PQCQKEPLFP TSMEQQFVCG
301: ALRDHDSPVD GDIPSATGSC NSGETSWWDG YSGDMAAQMA AEDDPLHDLD RFLQCDSFMD Y

Best Arabidopsis Sequence Match ( AT2G40750.1 )
(BLAST)

001: MDSNSNNTKS IKRKVVDQLV EGYEFATQLQ LLLSHQHSNQ YHIDETRLVS GSGSVSGGPD PVDELMSKIL GSFHKTISVL DSFDPVAVSV PIAVEGSWNA
101: SCGDDSATPV SCNGGDSGES KKKRLGVGKG KRGCYTRKTR SHTRIVEAKS SEDRYAWRKY GQKEILNTTF PRSYFRCTHK PTQGCKATKQ VQKQDQDSEM
201: FQITYIGYHT CTANDQTHAK TEPFDQEIIM DSEKTLAAST AQNHVNAMVQ EQENNTSSVT AIDAGMVKEE QNNNGDQSKD YYEGSSTGED LSLVWQETMM
301: FDDHQNHYYC GETSTTSHQF GFIDNDDQFS SFFDSYCADY ERTSAM

Arabidopsis Description

WRKY54Probable WRKY transcription factor 54 [Source:UniProtKB/Swiss-Prot;Acc:Q93WU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.