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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g008950.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc07g053170.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G23810.1 Solyc01g008950.2.1 AT2G41090.1 17360592
AT4G23810.1 Solyc10g077010.1.1 AT2G41090.1 17360592
AT4G23810.1 Solyc10g081170.1.1 AT2G41090.1 17360592
AT4G23810.1 Solyc11g072240.1.1 AT2G41090.1 17360592
AT4G23810.1 Solyc12g099990.1.1 AT2G41090.1 17360592
AT4G23810.1 Solyc01g008950.2.1 AT2G41100.1 17360592
AT4G23810.1 Solyc10g077010.1.1 AT2G41100.1 17360592
AT4G23810.1 Solyc10g081170.1.1 AT2G41100.1 17360592
AT4G23810.1 Solyc11g072240.1.1 AT2G41100.1 17360592
AT4G23810.1 Solyc12g099990.1.1 AT2G41100.1 17360592
AT4G23810.1 Solyc07g053170.2.1 AT4G08500.1 17587183
AT4G23810.1 Solyc03g005240.1.1 AT4G14640.1 17360592
AT4G23810.1 Solyc06g053930.2.1 AT4G14640.1 17360592
AT4G23810.1 Solyc01g008950.2.1 AT5G21274.1 17360592
AT4G23810.1 Solyc10g077010.1.1 AT5G21274.1 17360592
AT4G23810.1 Solyc10g081170.1.1 AT5G21274.1 17360592
AT4G23810.1 Solyc11g072240.1.1 AT5G21274.1 17360592
AT4G23810.1 Solyc12g099990.1.1 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400031695 Potato nucleus 95.58 95.58
Solyc08g008280.2.1 Tomato nucleus 62.83 59.17
VIT_02s0025g01280.t01 Wine grape nucleus 45.13 44.74
KRH41300 Soybean nucleus 46.31 43.73
KRH60029 Soybean nucleus 44.54 41.6
KRH77637 Soybean nucleus 38.94 40.99
AT4G11070.1 Thale cress nucleus 37.46 40.58
Bra019265.1-P Field mustard nucleus 37.46 39.32
CDX94221 Canola nucleus 37.17 39.25
CDY47621 Canola nucleus 36.58 39.24
CDY03518 Canola nucleus 36.28 39.05
CDY10969 Canola nucleus 37.17 39.01
Bra013732.1-P Field mustard nucleus 36.28 38.92
CDY65042 Canola nucleus 37.76 38.79
GSMUA_Achr3P15840_001 Banana nucleus 28.32 38.55
CDY25271 Canola nucleus 37.17 38.07
Bra033158.1-P Field mustard nucleus 37.17 38.07
Solyc10g009550.2.1 Tomato nucleus 31.86 37.24
AT4G23810.1 Thale cress nucleus 35.4 37.04
Solyc01g095630.2.1 Tomato nucleus 35.4 35.71
GSMUA_Achr7P14140_001 Banana nucleus 37.17 35.0
HORVU5Hr1G034830.3 Barley nucleus 33.92 34.64
GSMUA_Achr6P05710_001 Banana nucleus 34.51 34.41
GSMUA_Achr3P25080_001 Banana nucleus 33.63 34.34
TraesCS5B01G183700.1 Wheat nucleus 34.22 34.22
HORVU3Hr1G058670.1 Barley nucleus 24.78 33.73
TraesCS5D01G190700.1 Wheat nucleus 33.92 33.72
TraesCS5A01G185600.1 Wheat nucleus 33.92 33.53
GSMUA_Achr1P27980_001 Banana nucleus 30.38 33.23
TraesCS3D01G238300.1 Wheat nucleus 28.32 32.99
Os01t0656400-00 Rice nucleus 26.55 32.85
Zm00001d020136_P001 Maize nucleus 29.2 32.78
Zm00001d050247_P001 Maize nucleus 30.68 32.5
TraesCS2B01G187500.1 Wheat nucleus 28.02 32.42
HORVU3Hr1G059210.1 Barley nucleus 23.3 32.38
HORVU3Hr1G059220.1 Barley nucleus 28.91 31.82
Os05t0571200-01 Rice nucleus 25.96 31.77
TraesCS2D01G168600.1 Wheat nucleus 27.43 31.74
EER96589 Sorghum nucleus 28.91 31.61
Solyc03g007380.1.1 Tomato nucleus 32.74 31.44
TraesCS2A01G161500.1 Wheat nucleus 27.43 31.42
TraesCS5D01G190800.1 Wheat nucleus 32.45 31.34
TraesCS5A01G185700.1 Wheat nucleus 32.15 31.23
Zm00001d032265_P001 Maize nucleus 30.68 31.23
TraesCS5B01G183800.1 Wheat nucleus 31.86 31.21
GSMUA_AchrUn_... Banana nucleus 27.14 31.19
Os08t0386200-01 Rice nucleus 28.91 30.72
TraesCS1B01G440600.1 Wheat nucleus 21.53 30.67
TraesCS1D01G418500.1 Wheat nucleus 21.83 30.58
OQU80381 Sorghum nucleus 30.38 30.29
TraesCS1B01G440700.1 Wheat nucleus 21.53 30.29
Os11t0685700-00 Rice nucleus 17.11 30.21
TraesCS1D01G418400.1 Wheat nucleus 22.42 29.8
EES18716 Sorghum nucleus 23.89 29.78
HORVU2Hr1G029430.2 Barley mitochondrion, nucleus 21.24 29.51
HORVU1Hr1G090110.1 Barley nucleus 21.83 29.25
TraesCS1D01G418600.1 Wheat nucleus 21.24 29.15
HORVU1Hr1G090170.1 Barley nucleus 20.94 28.74
Zm00001d020137_P001 Maize nucleus 27.14 28.4
TraesCS1B01G440500.1 Wheat nucleus 21.83 28.35
HORVU1Hr1G090190.2 Barley nucleus 21.24 28.35
TraesCS1B01G440300.1 Wheat nucleus 20.35 28.16
EER96590 Sorghum nucleus 27.14 28.05
EES03370 Sorghum nucleus 28.61 28.03
Zm00001d011496_P002 Maize nucleus 26.84 27.83
HORVU1Hr1G090130.4 Barley nucleus 21.24 27.69
HORVU5Hr1G056130.2 Barley nucleus 31.86 27.55
TraesCS1A01G410700.1 Wheat nucleus 20.06 27.53
Zm00001d005622_P001 Maize nucleus 26.84 27.49
Os09t0334500-01 Rice nucleus 29.2 27.42
GSMUA_Achr10P... Banana extracellular, nucleus 25.07 27.42
HORVU0Hr1G012750.1 Barley nucleus 26.84 27.41
TraesCS1A01G410500.1 Wheat nucleus 20.35 27.27
EER87882 Sorghum nucleus 30.38 27.25
TraesCS1D01G418000.1 Wheat nucleus 19.76 27.24
TraesCS7B01G012600.1 Wheat nucleus 29.79 27.22
HORVU0Hr1G012740.1 Barley nucleus 25.66 26.93
Zm00001d044010_P001 Maize nucleus 26.25 26.57
Zm00001d036244_P001 Maize nucleus 28.61 26.5
TraesCS7D01G110600.1 Wheat nucleus 28.61 26.36
Solyc05g050330.2.1 Tomato nucleus 18.88 26.23
Zm00001d045283_P001 Maize nucleus 30.09 25.76
Os06t0158100-00 Rice nucleus 29.5 25.58
Solyc05g050310.1.1 Tomato cytosol, nucleus 4.42 25.42
Zm00001d009619_P002 Maize nucleus 22.12 25.25
TraesCS7A01G116000.1 Wheat nucleus 28.02 25.2
Solyc05g050300.1.1 Tomato nucleus 14.45 25.13
GSMUA_Achr4P15640_001 Banana nucleus 25.66 24.93
TraesCS1A01G410600.1 Wheat nucleus 16.52 24.03
Solyc05g050340.2.1 Tomato nucleus 22.12 22.94
Solyc03g095770.2.1 Tomato nucleus 17.99 22.34
Solyc09g015770.2.1 Tomato extracellular, nucleus 18.88 21.99
Solyc06g048870.1.1 Tomato nucleus, vacuole 14.75 20.58
Protein Annotations
MapMan:15.5.22Gene3D:2.20.25.80ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0043565InterPro:IPR003657InterPro:IPR036576UniProt:K4CPK7PFAM:PF03106
PFscan:PS50811PANTHER:PTHR32096PANTHER:PTHR32096:SF36SMART:SM00774SUPFAM:SSF118290EnsemblPlantsGene:Solyc08g082110.2
EnsemblPlants:Solyc08g082110.2.1UniParc:UPI000276C4BDInterPro:WRKY_domInterPro:WRKY_dom_sfSEG:seg:
Description
No Description!
Coordinates
chr8:-:64998391..65000398
Molecular Weight (calculated)
38575.7 Da
IEP (calculated)
5.397
GRAVY (calculated)
-0.744
Length
339 amino acids
Sequence
(BLAST)
001: MDCGFNYEYN SLINELTQGL EHVKQLRASN KIQELDFHLQ MILSSFEKSL SILNWSTSGL ATQTPLLVAP PESSISVDEN PKSDDQDFIY VSKKRKQMPT
101: WSEQVRVSSE NGYEGPTDDG YSWRKYGQKD ILGAKYPRSY YRCTYRLMQN CWATKQVQRS DDDPALFEIT YKGTHTCNQT YNCAAATQPK SPQKHKHKKQ
201: ANNSRTTPSN QMLANLQANL RVNTDDLDKK EATCSFPFSP TFSGFVDENL HFQMSQVDDS LVGGYSPSFV SPTTPESSYF SLPTCQMNDS RRMYNAYHSE
301: SDLPDLFSAN TSSTSSPIIG LEFPLEHVEL DPNFSDFFR
Best Arabidopsis Sequence Match ( AT4G23810.1 )
(BLAST)
001: MEGRDMLSWE QKTLLSELIN GFDAAKKLQA RLREAPSPSS SFSSPATAVA ETNEILVKQI VSSYERSLLL LNWSSSPSVQ LIPTPVTVVP VANPGSVPES
101: PASINGSPRS EEFADGGGSS ESHHRQDYIF NSKKRKMLPK WSEKVRISPE RGLEGPQDDV FSWRKYGQKD ILGAKFPRSY YRCTHRSTQN CWATKQVQRS
201: DGDATVFEVT YRGTHTCSQA ITRTPPLASP EKRQDTRVKP AITQKPKDIL ESLKSNLTVR TDGLDDGKDV FSFPDTPPFY NYGTINGEFG HVESSPIFDV
301: VDWFNPTVEI DTTFPAFLHE SIYY
Arabidopsis Description
WRKY53Probable WRKY transcription factor 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUP6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.