Factsheet for HORVU3Hr1G058670.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G006660.1
HORVU4Hr1G026290.3
HORVU4Hr1G061550.1
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4
HORVU6Hr1G079810.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23810.1	HORVU0Hr1G001280.1	AT2G41090.1	17360592
AT4G23810.1	HORVU2Hr1G016740.4	AT2G41090.1	17360592
AT4G23810.1	HORVU3Hr1G038010.1	AT2G41090.1	17360592
AT4G23810.1	HORVU3Hr1G079210.4	AT2G41090.1	17360592
AT4G23810.1	HORVU4Hr1G026290.3	AT2G41090.1	17360592
AT4G23810.1	HORVU5Hr1G014060.1	AT2G41090.1	17360592
AT4G23810.1	HORVU5Hr1G014070.2	AT2G41090.1	17360592
AT4G23810.1	HORVU5Hr1G044710.4	AT2G41090.1	17360592
AT4G23810.1	HORVU0Hr1G001280.1	AT2G41100.1	17360592
AT4G23810.1	HORVU2Hr1G016740.4	AT2G41100.1	17360592
AT4G23810.1	HORVU3Hr1G038010.1	AT2G41100.1	17360592
AT4G23810.1	HORVU3Hr1G079210.4	AT2G41100.1	17360592
AT4G23810.1	HORVU4Hr1G026290.3	AT2G41100.1	17360592
AT4G23810.1	HORVU5Hr1G014060.1	AT2G41100.1	17360592
AT4G23810.1	HORVU5Hr1G014070.2	AT2G41100.1	17360592
AT4G23810.1	HORVU5Hr1G044710.4	AT2G41100.1	17360592
AT4G23810.1	HORVU4Hr1G006660.1	AT4G08500.1	17587183
AT4G23810.1	HORVU4Hr1G061550.1	AT4G08500.1	17587183
AT4G23810.1	HORVU6Hr1G079810.1	AT4G08500.1	17587183
AT4G23810.1	HORVU0Hr1G001280.1	AT5G21274.1	17360592
AT4G23810.1	HORVU2Hr1G016740.4	AT5G21274.1	17360592
AT4G23810.1	HORVU3Hr1G038010.1	AT5G21274.1	17360592
AT4G23810.1	HORVU3Hr1G079210.4	AT5G21274.1	17360592
AT4G23810.1	HORVU4Hr1G026290.3	AT5G21274.1	17360592
AT4G23810.1	HORVU5Hr1G014060.1	AT5G21274.1	17360592
AT4G23810.1	HORVU5Hr1G014070.2	AT5G21274.1	17360592
AT4G23810.1	HORVU5Hr1G044710.4	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G034830.3	Barley	nucleus	89.16	66.87
TraesCS5B01G183700.1	Wheat	nucleus	80.72	59.29
HORVU0Hr1G012750.1	Barley	nucleus	78.71	59.04
TraesCS5D01G190700.1	Wheat	nucleus	80.32	58.65
TraesCS5A01G185600.1	Wheat	nucleus	79.12	57.43
HORVU5Hr1G056130.2	Barley	nucleus	57.03	36.22
HORVU0Hr1G012740.1	Barley	nucleus	45.38	34.98
GSMUA_Achr3P15840_001	Banana	nucleus	28.92	28.92
HORVU2Hr1G029430.2	Barley	mitochondrion, nucleus	25.7	26.23
GSMUA_Achr3P25080_001	Banana	nucleus	34.14	25.6
Solyc08g082110.2.1	Tomato	nucleus	33.73	24.78
PGSC0003DMT400031695	Potato	nucleus	33.73	24.78
VIT_15s0046g01140.t01	Wine grape	nucleus	32.13	24.77
KRH77637	Soybean	nucleus	31.33	24.22
HORVU6Hr1G013890.3	Barley	nucleus	20.08	22.62
HORVU4Hr1G051970.1	Barley	nucleus	11.24	22.4
HORVU1Hr1G090170.1	Barley	nucleus	21.69	21.86
HORVU1Hr1G090190.2	Barley	nucleus	22.09	21.65
VIT_02s0025g01280.t01	Wine grape	nucleus	29.72	21.64
KRH41300	Soybean	nucleus	30.92	21.45
VIT_16s0050g02510.t01	Wine grape	nucleus	31.33	21.43
AT4G11070.1	Thale cress	nucleus	26.91	21.41
PGSC0003DMT400014949	Potato	nucleus	30.92	21.39
Solyc08g008280.2.1	Tomato	nucleus	30.92	21.39
HORVU1Hr1G090110.1	Barley	nucleus	21.69	21.34
CDY65042	Canola	nucleus	28.11	21.21
KRH53440	Soybean	nucleus	30.92	21.15
Solyc10g009550.2.1	Tomato	nucleus	24.5	21.03
KRH68901	Soybean	nucleus	30.52	20.99
KRG97154	Soybean	nucleus	30.12	20.72
PGSC0003DMT400051194	Potato	nucleus	24.1	20.69
CDY03518	Canola	nucleus	26.1	20.63
KRH64503	Soybean	nucleus	30.12	20.6
Bra033158.1-P	Field mustard	nucleus	27.31	20.54
CDY25271	Canola	nucleus	27.31	20.54
Solyc05g050300.1.1	Tomato	nucleus	16.06	20.51
Bra013732.1-P	Field mustard	nucleus	25.7	20.25
CDY47621	Canola	nucleus	25.7	20.25
CDX94221	Canola	nucleus	26.1	20.25
AT5G24110.1	Thale cress	nucleus	24.5	20.13
Bra019265.1-P	Field mustard	nucleus	26.1	20.12
HORVU1Hr1G090130.4	Barley	nucleus	20.88	20.0
KRH60029	Soybean	nucleus	28.92	19.83
CDY10969	Canola	nucleus	25.7	19.81
CDX80414	Canola	nucleus	24.9	19.81
AT4G23810.1	Thale cress	nucleus	25.7	19.75
Bra026467.1-P	Field mustard	nucleus	24.5	19.55
CDX88077	Canola	nucleus	24.5	19.49
Bra009734.1-P	Field mustard	nucleus	24.5	19.49
AT2G46400.1	Thale cress	nucleus	22.89	19.32
CDX87141	Canola	nucleus	24.1	19.23
HORVU3Hr1G059220.1	Barley	nucleus	23.69	19.16
CDX89127	Canola	nucleus	21.29	19.13
Bra014426.1-P	Field mustard	nucleus	21.29	19.13
PGSC0003DMT400000599	Potato	nucleus	26.51	19.08
KRH06499	Soybean	nucleus	28.51	19.03
KRH47935	Soybean	nucleus	28.11	18.97
CDY19847	Canola	nucleus	23.69	18.91
Bra000423.1-P	Field mustard	nucleus	21.29	18.86
HORVU3Hr1G059210.1	Barley	nucleus	18.47	18.85
HORVU3Hr1G080860.1	Barley	nucleus	18.88	18.36
Bra004540.1-P	Field mustard	nucleus	20.88	18.25
Solyc01g095630.2.1	Tomato	nucleus	24.5	18.15
CDX83367	Canola	nucleus	20.08	17.99
CDX80015	Canola	nucleus	21.29	17.91
CDX95699	Canola	nucleus	20.48	17.89
Solyc03g007380.1.1	Tomato	nucleus	24.9	17.56
CDY42043	Canola	nucleus	20.48	17.41
HORVU3Hr1G080980.1	Barley	nucleus	16.87	17.14
PGSC0003DMT400023502	Potato	nucleus	24.1	16.85
HORVU4Hr1G052010.2	Barley	nucleus	13.25	16.02
HORVU7Hr1G075960.1	Barley	nucleus, plastid	18.47	15.7
HORVU3Hr1G080890.1	Barley	nucleus, plastid, vacuole	18.07	15.31
PGSC0003DMT400046351	Potato	nucleus	18.47	15.28
HORVU4Hr1G050320.2	Barley	nucleus	18.07	15.1
HORVU1Hr1G069620.7	Barley	nucleus	18.07	15.0
PGSC0003DMT400084227	Potato	nucleus	17.67	14.97
HORVU7Hr1G083270.2	Barley	nucleus	17.67	14.29
HORVU2Hr1G006600.1	Barley	nucleus	17.67	13.71
PGSC0003DMT400084214	Potato	nucleus	18.07	13.6
Solyc05g050330.2.1	Tomato	nucleus	13.25	13.52
Solyc05g050340.2.1	Tomato	nucleus	17.67	13.46
HORVU3Hr1G081030.3	Barley	nucleus	17.27	13.44
HORVU1Hr1G069640.2	Barley	nucleus	15.26	12.97
HORVU2Hr1G017740.3	Barley	nucleus	18.07	12.93
HORVU4Hr1G022970.2	Barley	nucleus, plastid	14.06	12.54
HORVU0Hr1G030830.1	Barley	nucleus, plastid	14.06	12.5
HORVU2Hr1G017720.1	Barley	nucleus, plastid	18.07	12.23
HORVU1Hr1G069610.1	Barley	nucleus	14.06	12.11
HORVU2Hr1G109330.1	Barley	mitochondrion, nucleus, vacuole	15.66	12.0
HORVU0Hr1G023420.1	Barley	nucleus, plastid	14.06	11.22
HORVU3Hr1G080960.1	Barley	nucleus	12.85	8.89
HORVU3Hr1G081000.3	Barley	plastid	6.02	7.58
CDX80415	Canola	nucleus	2.81	4.73
Solyc05g050310.1.1	Tomato	cytosol, nucleus	0.8	3.39

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A287L7I3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:HORVU3Hr1G058670	EnsemblPlants:HORVU3Hr1G058670.1	InterPro:IPR003657	InterPro:IPR036576
PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR32096	PANTHER:PTHR32096:SF33	SMART:SM00774	SUPFAM:SSF118290
UniParc:UPI000B467CE8	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr3H:+:442677805..442679264

Molecular Weight (calculated)

25684.8 Da

IEP (calculated)

6.337

GRAVY (calculated)

-0.379

Length

249 amino acids

Sequence
(BLAST)

001: ISNMSSTYSI RNATEKIMEK RKHQVRVSSE VGGAETPVDD GHSWRKYGQK DILGMQHCRG YYRCTHRKSQ GCAATXXXXX XXXXXXXFDV IYHGEHTCIH
101: KTVAALAAGH AEENPGASRL LQNLSTSLTV NTEGLTATAG HQGCSTTTSF CFSSQAARVL APQEHYPFSM PSTPENCFGQ GASLSTSLEP SPVTSDSNRF
201: SMTPFQAEWR ARSELDEVVS ALVAAGAPAM EETPFSLDGF EFDVSGFFA

Best Arabidopsis Sequence Match ( AT4G23810.1 )
(BLAST)

001: MEGRDMLSWE QKTLLSELIN GFDAAKKLQA RLREAPSPSS SFSSPATAVA ETNEILVKQI VSSYERSLLL LNWSSSPSVQ LIPTPVTVVP VANPGSVPES
101: PASINGSPRS EEFADGGGSS ESHHRQDYIF NSKKRKMLPK WSEKVRISPE RGLEGPQDDV FSWRKYGQKD ILGAKFPRSY YRCTHRSTQN CWATKQVQRS
201: DGDATVFEVT YRGTHTCSQA ITRTPPLASP EKRQDTRVKP AITQKPKDIL ESLKSNLTVR TDGLDDGKDV FSFPDTPPFY NYGTINGEFG HVESSPIFDV
301: VDWFNPTVEI DTTFPAFLHE SIYY

Arabidopsis Description

WRKY53Probable WRKY transcription factor 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUP6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.