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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus

Predictor Summary:
  • plastid 1
  • nucleus 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, nucleus
Any Predictor:mitochondrion, nucleus, plastid
iPSORT:plastid
MultiLoc:nucleus
TargetP:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G006660.1
HORVU4Hr1G026290.3
HORVU4Hr1G061550.1
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4
HORVU6Hr1G079810.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G23810.1 HORVU0Hr1G001280.1 AT2G41090.1 17360592
AT4G23810.1 HORVU2Hr1G016740.4 AT2G41090.1 17360592
AT4G23810.1 HORVU3Hr1G038010.1 AT2G41090.1 17360592
AT4G23810.1 HORVU3Hr1G079210.4 AT2G41090.1 17360592
AT4G23810.1 HORVU4Hr1G026290.3 AT2G41090.1 17360592
AT4G23810.1 HORVU5Hr1G014060.1 AT2G41090.1 17360592
AT4G23810.1 HORVU5Hr1G014070.2 AT2G41090.1 17360592
AT4G23810.1 HORVU5Hr1G044710.4 AT2G41090.1 17360592
AT4G23810.1 HORVU0Hr1G001280.1 AT2G41100.1 17360592
AT4G23810.1 HORVU2Hr1G016740.4 AT2G41100.1 17360592
AT4G23810.1 HORVU3Hr1G038010.1 AT2G41100.1 17360592
AT4G23810.1 HORVU3Hr1G079210.4 AT2G41100.1 17360592
AT4G23810.1 HORVU4Hr1G026290.3 AT2G41100.1 17360592
AT4G23810.1 HORVU5Hr1G014060.1 AT2G41100.1 17360592
AT4G23810.1 HORVU5Hr1G014070.2 AT2G41100.1 17360592
AT4G23810.1 HORVU5Hr1G044710.4 AT2G41100.1 17360592
AT4G23810.1 HORVU4Hr1G006660.1 AT4G08500.1 17587183
AT4G23810.1 HORVU4Hr1G061550.1 AT4G08500.1 17587183
AT4G23810.1 HORVU6Hr1G079810.1 AT4G08500.1 17587183
AT4G23810.1 HORVU0Hr1G001280.1 AT5G21274.1 17360592
AT4G23810.1 HORVU2Hr1G016740.4 AT5G21274.1 17360592
AT4G23810.1 HORVU3Hr1G038010.1 AT5G21274.1 17360592
AT4G23810.1 HORVU3Hr1G079210.4 AT5G21274.1 17360592
AT4G23810.1 HORVU4Hr1G026290.3 AT5G21274.1 17360592
AT4G23810.1 HORVU5Hr1G014060.1 AT5G21274.1 17360592
AT4G23810.1 HORVU5Hr1G014070.2 AT5G21274.1 17360592
AT4G23810.1 HORVU5Hr1G044710.4 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G168600.1 Wheat nucleus 85.66 71.33
TraesCS2B01G187500.1 Wheat nucleus 84.84 70.65
TraesCS2A01G161500.1 Wheat nucleus 84.84 69.93
Os08t0386200-01 Rice nucleus 60.25 46.08
Zm00001d032265_P001 Maize nucleus 57.79 42.34
OQU80381 Sorghum nucleus 58.2 41.76
Zm00001d050247_P001 Maize nucleus 54.1 41.25
GSMUA_Achr3P15840_001 Banana nucleus 35.66 34.94
HORVU5Hr1G034830.3 Barley nucleus 44.67 32.83
VIT_15s0046g01140.t01 Wine grape nucleus 37.3 28.17
HORVU0Hr1G012740.1 Barley nucleus 36.89 27.86
HORVU1Hr1G090190.2 Barley nucleus 28.69 27.56
GSMUA_Achr3P25080_001 Banana nucleus 37.3 27.41
HORVU5Hr1G056130.2 Barley nucleus 43.85 27.3
HORVU3Hr1G059210.1 Barley nucleus 27.05 27.05
HORVU1Hr1G090170.1 Barley nucleus 26.23 25.91
Solyc10g009550.2.1 Tomato nucleus 30.74 25.86
HORVU3Hr1G058670.1 Barley nucleus 26.23 25.7
PGSC0003DMT400051194 Potato nucleus 30.33 25.52
VIT_02s0025g01280.t01 Wine grape nucleus 35.25 25.15
HORVU1Hr1G090110.1 Barley nucleus 25.82 24.9
VIT_16s0050g02510.t01 Wine grape nucleus 36.89 24.73
KRH77637 Soybean nucleus 32.38 24.53
KRH68901 Soybean nucleus 36.07 24.31
Solyc01g095630.2.1 Tomato nucleus 33.2 24.11
KRG97154 Soybean nucleus 35.66 24.03
HORVU3Hr1G059220.1 Barley nucleus 30.33 24.03
PGSC0003DMT400000599 Potato nucleus 34.02 23.99
KRH64503 Soybean nucleus 35.66 23.9
HORVU1Hr1G090130.4 Barley nucleus 25.41 23.85
Solyc05g050310.1.1 Tomato cytosol, nucleus 5.74 23.73
KRH53440 Soybean nucleus 35.25 23.63
AT2G46400.1 Thale cress nucleus 28.28 23.39
PGSC0003DMT400014949 Potato nucleus 34.02 23.06
KRH41300 Soybean nucleus 33.61 22.84
KRH60029 Soybean nucleus 33.61 22.59
AT4G23810.1 Thale cress nucleus 29.92 22.53
CDX94221 Canola nucleus 29.51 22.43
CDY65042 Canola nucleus 30.33 22.42
Solyc03g007380.1.1 Tomato nucleus 32.38 22.38
Bra019265.1-P Field mustard nucleus 29.51 22.29
CDY03518 Canola nucleus 28.69 22.22
PGSC0003DMT400023502 Potato nucleus 32.38 22.19
PGSC0003DMT400031695 Potato nucleus 30.74 22.12
CDX89127 Canola nucleus 25.0 22.02
Bra014426.1-P Field mustard nucleus 25.0 22.02
CDY47621 Canola nucleus 28.28 21.84
Bra013732.1-P Field mustard nucleus 28.28 21.84
AT4G11070.1 Thale cress nucleus 27.87 21.73
CDX80414 Canola nucleus 27.87 21.73
Bra000423.1-P Field mustard nucleus 25.0 21.71
Solyc08g008280.2.1 Tomato nucleus 31.97 21.67
CDY25271 Canola nucleus 29.1 21.45
Bra033158.1-P Field mustard nucleus 29.1 21.45
KRH06499 Soybean nucleus 32.79 21.45
KRH47935 Soybean nucleus 32.38 21.41
Bra004540.1-P Field mustard nucleus 25.0 21.4
CDY10969 Canola nucleus 28.28 21.36
Solyc05g050330.2.1 Tomato nucleus 21.31 21.31
Solyc08g082110.2.1 Tomato nucleus 29.51 21.24
CDX83367 Canola nucleus 24.18 21.22
Bra009734.1-P Field mustard nucleus 27.05 21.09
CDX88077 Canola nucleus 27.05 21.09
CDX95699 Canola nucleus 24.59 21.05
CDX80015 Canola nucleus 25.41 20.95
CDY42043 Canola nucleus 25.0 20.82
Bra026467.1-P Field mustard nucleus 26.23 20.51
HORVU3Hr1G080980.1 Barley nucleus 20.49 20.41
CDX87141 Canola nucleus 25.82 20.19
HORVU4Hr1G051970.1 Barley nucleus 10.25 20.0
HORVU6Hr1G013890.3 Barley nucleus 18.03 19.91
CDY19847 Canola nucleus 25.41 19.87
AT5G24110.1 Thale cress nucleus 24.59 19.8
HORVU0Hr1G012750.1 Barley nucleus 26.64 19.58
PGSC0003DMT400046351 Potato nucleus 23.36 18.94
PGSC0003DMT400084227 Potato nucleus 22.13 18.37
Solyc05g050340.2.1 Tomato nucleus 24.59 18.35
HORVU7Hr1G083270.2 Barley nucleus 22.54 17.86
PGSC0003DMT400084214 Potato nucleus 24.18 17.82
HORVU0Hr1G030830.1 Barley nucleus, plastid 20.08 17.5
HORVU3Hr1G080860.1 Barley nucleus 18.03 17.19
HORVU3Hr1G081030.3 Barley nucleus 22.54 17.19
HORVU3Hr1G081000.3 Barley plastid 13.93 17.17
Solyc05g050300.1.1 Tomato nucleus 13.52 16.92
HORVU4Hr1G050320.2 Barley nucleus 20.49 16.78
HORVU2Hr1G109330.1 Barley mitochondrion, nucleus, vacuole 22.13 16.62
HORVU1Hr1G069620.7 Barley nucleus 19.67 16.0
HORVU4Hr1G052010.2 Barley nucleus 13.11 15.53
HORVU2Hr1G017740.3 Barley nucleus 20.9 14.66
HORVU2Hr1G006600.1 Barley nucleus 19.26 14.64
HORVU3Hr1G080890.1 Barley nucleus, plastid, vacuole 17.21 14.29
HORVU2Hr1G017720.1 Barley nucleus, plastid 20.49 13.59
HORVU1Hr1G069610.1 Barley nucleus 15.57 13.15
HORVU7Hr1G075960.1 Barley nucleus, plastid 15.57 12.97
HORVU1Hr1G069640.2 Barley nucleus 14.75 12.29
HORVU0Hr1G023420.1 Barley nucleus, plastid 15.57 12.18
CDX80415 Canola nucleus 7.38 12.16
HORVU4Hr1G022970.2 Barley nucleus, plastid 13.11 11.47
HORVU3Hr1G080960.1 Barley nucleus 16.8 11.39
Protein Annotations
MapMan:15.5.22Gene3D:2.20.25.80UniProt:A0A287HIS4GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0043565EnsemblPlantsGene:HORVU2Hr1G029430EnsemblPlants:HORVU2Hr1G029430.2InterPro:IPR003657InterPro:IPR036576
PFAM:PF03106PFscan:PS50811PANTHER:PTHR32096PANTHER:PTHR32096:SF26SMART:SM00774SUPFAM:SSF118290
UniParc:UPI000B484844InterPro:WRKY_domInterPro:WRKY_dom_sfSEG:seg::
Description
No Description!
Coordinates
chrchr2H:+:104974255..104975280
Molecular Weight (calculated)
26200.6 Da
IEP (calculated)
8.330
GRAVY (calculated)
-0.420
Length
244 amino acids
Sequence
(BLAST)
001: RTRRRRINPS VSAAMESVEG NGTGRGNLQL VVSELCRIQE LVRQLELHLH APDTSVDLCR ALTAQIFALT DRSIGFVAAA HSSDAPTTPS STSSSLSGVS
101: DQPFRTNTKK RKATARWTSQ VRVSAAGGAE GPVDDGHSWR KYGQKDILGA KHPRAYYRCT HRNSQGCTAT KQVXTSPSMA SPVASGSNGG PTMSPYPAGA
201: YTEWPLDGDL QEVVSVFTAV SAPSMDYLFE FDPTFDVDAP NFFM
Best Arabidopsis Sequence Match ( AT4G11070.2 )
(BLAST)
001: MEMMNWERRS LLNELIHGLK AAKQLQAILM LNGSTTQHNP TIELAPDPLA HPGKVPGSPA SITGNPRSEE FFNVRSKEFN LSSKKRKMLP KWTEQVRISP
101: ERGLEGPHDD IFSWRKYGQK DILGAKFPRS YYRCTFRNTQ YCWATKQVQR SDGDPTIFEV TYRGTHTCSQ GIPLPEKRET KPKHTVAVNY QNLRASLTVR
201: TGGLGSEAFS FPVTSPLYTY ESINGGGTFY HHVGSSGPSD FTGLISTNTS TGSSPIFDVN FQFDPTAEIN TGFPTFFHNS I
Arabidopsis Description
WRKY41Probable WRKY transcription factor 41 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0Y8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.