Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G440500.1 | Wheat | nucleus | 92.16 | 90.04 |
| HORVU1Hr1G090130.4 | Barley | nucleus | 81.96 | 80.38 |
| TraesCS1D01G418600.1 | Wheat | nucleus | 74.51 | 76.92 |
| TraesCS1D01G418500.1 | Wheat | nucleus | 71.76 | 75.62 |
| TraesCS1D01G418000.1 | Wheat | nucleus | 70.98 | 73.58 |
| Os05t0571200-01 | Rice | nucleus | 52.16 | 48.01 |
| EES18716 | Sorghum | nucleus | 49.41 | 46.32 |
| Zm00001d009619_P002 | Maize | nucleus | 48.24 | 41.41 |
| TraesCS3D01G238300.1 | Wheat | nucleus | 43.92 | 38.49 |
| TraesCS2D01G168600.1 | Wheat | nucleus | 32.16 | 27.99 |
| GSMUA_Achr3P15840_001 | Banana | nucleus | 26.27 | 26.91 |
| GSMUA_Achr3P25080_001 | Banana | nucleus | 33.33 | 25.6 |
| VIT_15s0046g01140.t01 | Wine grape | nucleus | 32.16 | 25.39 |
| Bra019265.1-P | Field mustard | nucleus | 29.8 | 23.53 |
| CDX94221 | Canola | nucleus | 29.41 | 23.36 |
| CDY10969 | Canola | nucleus | 29.41 | 23.22 |
| CDY03518 | Canola | nucleus | 28.63 | 23.17 |
| TraesCS5D01G190700.1 | Wheat | nucleus | 30.98 | 23.17 |
| Solyc10g009550.2.1 | Tomato | nucleus | 26.27 | 23.1 |
| Bra013732.1-P | Field mustard | nucleus | 28.63 | 23.1 |
| CDY47621 | Canola | nucleus | 28.24 | 22.78 |
| PGSC0003DMT400031695 | Potato | nucleus | 29.8 | 22.42 |
| Solyc08g082110.2.1 | Tomato | nucleus | 29.8 | 22.42 |
| PGSC0003DMT400051194 | Potato | nucleus | 25.49 | 22.41 |
| AT4G23810.1 | Thale cress | nucleus | 28.24 | 22.22 |
| KRH77637 | Soybean | nucleus | 27.84 | 22.05 |
| AT4G11070.1 | Thale cress | nucleus | 27.06 | 22.04 |
| KRH41300 | Soybean | nucleus | 30.98 | 22.01 |
| VIT_16s0050g02510.t01 | Wine grape | nucleus | 31.37 | 21.98 |
| CDY65042 | Canola | nucleus | 28.24 | 21.82 |
| Bra026467.1-P | Field mustard | nucleus | 26.67 | 21.79 |
| CDX87141 | Canola | nucleus | 26.67 | 21.79 |
| CDY25271 | Canola | nucleus | 28.24 | 21.75 |
| Bra033158.1-P | Field mustard | nucleus | 28.24 | 21.75 |
| Solyc05g050330.2.1 | Tomato | nucleus | 20.78 | 21.72 |
| Solyc03g007380.1.1 | Tomato | nucleus | 29.8 | 21.53 |
| KRH60029 | Soybean | nucleus | 30.59 | 21.49 |
| CDY19847 | Canola | nucleus | 26.27 | 21.47 |
| TraesCS5D01G190800.1 | Wheat | nucleus | 29.41 | 21.37 |
| CDX80414 | Canola | nucleus | 25.88 | 21.09 |
| AT5G24110.1 | Thale cress | nucleus | 24.71 | 20.79 |
| PGSC0003DMT400023502 | Potato | nucleus | 29.02 | 20.79 |
| CDX88077 | Canola | nucleus | 25.49 | 20.77 |
| Bra009734.1-P | Field mustard | nucleus | 25.49 | 20.77 |
| AT2G46400.1 | Thale cress | nucleus | 23.92 | 20.68 |
| Solyc05g050300.1.1 | Tomato | nucleus | 15.69 | 20.51 |
| VIT_02s0025g01280.t01 | Wine grape | nucleus | 27.45 | 20.47 |
| KRH64503 | Soybean | nucleus | 29.02 | 20.33 |
| Bra000423.1-P | Field mustard | nucleus | 22.35 | 20.28 |
| KRH68901 | Soybean | nucleus | 28.63 | 20.17 |
| CDX83367 | Canola | nucleus | 21.96 | 20.14 |
| KRH53440 | Soybean | nucleus | 28.63 | 20.05 |
| KRG97154 | Soybean | nucleus | 28.24 | 19.89 |
| CDY42043 | Canola | nucleus | 22.75 | 19.8 |
| KRH47935 | Soybean | nucleus | 28.63 | 19.78 |
| KRH06499 | Soybean | nucleus | 28.63 | 19.57 |
| TraesCS4D01G119700.1 | Wheat | nucleus | 16.86 | 19.37 |
| Solyc01g095630.2.1 | Tomato | nucleus | 25.49 | 19.35 |
| CDX95699 | Canola | nucleus | 21.57 | 19.3 |
| Bra004540.1-P | Field mustard | nucleus | 21.57 | 19.3 |
| TraesCS7D01G110600.1 | Wheat | nucleus | 27.84 | 19.29 |
| CDX80015 | Canola | nucleus | 22.35 | 19.26 |
| PGSC0003DMT400014949 | Potato | nucleus | 27.06 | 19.17 |
| PGSC0003DMT400000599 | Potato | nucleus | 25.88 | 19.08 |
| PGSC0003DMT400046351 | Potato | nucleus | 22.35 | 18.94 |
| TraesCS3D01G337500.1 | Wheat | nucleus | 20.0 | 18.89 |
| Solyc08g008280.2.1 | Tomato | nucleus | 26.67 | 18.89 |
| PGSC0003DMT400084227 | Potato | nucleus | 21.57 | 18.71 |
| TraesCS1D01G300700.1 | Wheat | nucleus | 21.96 | 18.48 |
| TraesCS3D01G337600.1 | Wheat | nucleus | 19.61 | 18.45 |
| TraesCS4D01G178400.1 | Wheat | nucleus | 14.9 | 18.45 |
| TraesCS3D01G337000.1 | Wheat | nucleus | 18.43 | 18.43 |
| CDX89127 | Canola | nucleus | 20.0 | 18.41 |
| Bra014426.1-P | Field mustard | nucleus | 20.0 | 18.41 |
| TraesCS2D01G489700.1 | Wheat | nucleus | 20.78 | 18.09 |
| TraesCS1D01G300500.1 | Wheat | plastid | 21.57 | 17.92 |
| TraesCS2D01G104600.1 | Wheat | nucleus | 23.14 | 17.56 |
| Solyc05g050340.2.1 | Tomato | nucleus | 22.35 | 17.43 |
| TraesCS2D01G042700.1 | Wheat | nucleus | 20.0 | 17.41 |
| TraesCS1D01G300300.1 | Wheat | nucleus | 20.78 | 17.26 |
| TraesCS3D01G337400.1 | Wheat | nucleus | 21.57 | 17.08 |
| TraesCS2D01G104700.1 | Wheat | nucleus | 23.14 | 17.05 |
| Solyc05g050310.1.1 | Tomato | cytosol, nucleus | 3.92 | 16.95 |
| PGSC0003DMT400084214 | Potato | nucleus | 21.96 | 16.92 |
| TraesCS3D01G337100.1 | Wheat | nucleus | 17.65 | 16.85 |
| TraesCS7D01G345700.1 | Wheat | nucleus | 19.61 | 16.78 |
| TraesCS4D01G172200.1 | Wheat | nucleus | 19.22 | 16.39 |
| TraesCS1D01G300400.1 | Wheat | nucleus | 17.25 | 15.33 |
| TraesCS2D01G104500.1 | Wheat | nucleus | 20.78 | 15.1 |
| TraesCS1D01G300600.1 | Wheat | nucleus | 16.86 | 14.98 |
| TraesCS1D01G300900.1 | Wheat | nucleus | 16.86 | 14.83 |
| TraesCS6D01G074200.1 | Wheat | nucleus | 21.57 | 14.1 |
| TraesCS2D01G497600.1 | Wheat | nucleus | 18.82 | 13.26 |
| TraesCS3D01G337300.1 | Wheat | nucleus | 19.22 | 13.07 |
| TraesCS2D01G497700.1 | Wheat | nucleus | 18.04 | 12.74 |
| CDX80415 | Canola | nucleus | 6.67 | 11.49 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 |
| PFscan:PS50811 | PANTHER:PTHR32096 | PANTHER:PTHR32096:SF20 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS1D01G418400 |
| EnsemblPlants:TraesCS1D01G418400.1 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1D:+:475913217..475913984
Molecular Weight (calculated)
27097.7 Da
IEP (calculated)
5.118
GRAVY (calculated)
-0.383
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDTAATLAT ELDRLLAMAR ELEARVDGAP GAARELCAAL AESVDRAMRL AGSCPRGGGG EGNAGNVRAS VSGQVRGGRK AGANKVRTQV RVASVTDAGP
101: LNDGLSWRKY GQKDILGAAY PRAYFRCTHR HSQGCQATKQ VQRAHADPLL FDVVYLGAHT CAQATAILAG PEQQPPAAFA LEHQQQETSP EEGIQWPVEP
201: VTPPPFPSSP ASCYTPGSPW CQLAGSYGYA AGGDDTEYDA EFVEMFLNLS EFQNM
101: LNDGLSWRKY GQKDILGAAY PRAYFRCTHR HSQGCQATKQ VQRAHADPLL FDVVYLGAHT CAQATAILAG PEQQPPAAFA LEHQQQETSP EEGIQWPVEP
201: VTPPPFPSSP ASCYTPGSPW CQLAGSYGYA AGGDDTEYDA EFVEMFLNLS EFQNM
001: MEMMNWERRS LLNELIHGLK AAKQLQAILM LNGSTTQHNP TIELAPDPLA HPGKVPGSPA SITGNPRSEE FFNVRSKEFN LSSKKRKMLP KWTEQVRISP
101: ERGLEGPHDD IFSWRKYGQK DILGAKFPRS YYRCTFRNTQ YCWATKQVQR SDGDPTIFEV TYRGTHTCSQ GIPLPEKRET KPKHTVAVNY QNLRASLTVR
201: TGGLGSEAFS FPVTSPLYTY ESINGGGTFY HHVGSSGPSD FTGLISTNTS TGSSPIFDVN FQFDPTAEIN TGFPTFFHNS I
101: ERGLEGPHDD IFSWRKYGQK DILGAKFPRS YYRCTFRNTQ YCWATKQVQR SDGDPTIFEV TYRGTHTCSQ GIPLPEKRET KPKHTVAVNY QNLRASLTVR
201: TGGLGSEAFS FPVTSPLYTY ESINGGGTFY HHVGSSGPSD FTGLISTNTS TGSSPIFDVN FQFDPTAEIN TGFPTFFHNS I
Arabidopsis Description
WRKY41Probable WRKY transcription factor 41 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0Y8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.