Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER97449 | Sorghum | cytosol | 92.6 | 93.78 |
| Zm00001d021946_P001 | Maize | cytosol | 90.43 | 89.78 |
| Os07t0583600-01 | Rice | plasma membrane | 79.78 | 81.25 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 80.32 | 79.89 |
| TraesCS2B01G217500.1 | Wheat | cytosol | 79.42 | 79.42 |
| TraesCS2D01G198200.1 | Wheat | cytosol | 79.42 | 79.28 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 79.24 | 79.24 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 42.06 | 71.04 |
| Bra026077.1-P | Field mustard | cytosol | 36.1 | 68.03 |
| Bra015156.1-P | Field mustard | cytosol | 36.28 | 63.21 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 43.32 | 60.45 |
| CDY71156 | Canola | cytosol, plastid | 42.06 | 59.74 |
| CDY00883 | Canola | cytosol | 43.5 | 59.51 |
| CDY07309 | Canola | cytosol | 25.45 | 58.75 |
| AT2G04890.1 | Thale cress | cytosol | 43.68 | 58.6 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.13 | 58.41 |
| CDY22807 | Canola | nucleus | 43.68 | 57.62 |
| CDY37124 | Canola | nucleus | 43.68 | 57.62 |
| KRH74015 | Soybean | cytosol | 55.96 | 57.3 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 56.14 | 57.06 |
| PGSC0003DMT400015696 | Potato | cytosol | 55.05 | 57.01 |
| KRH14104 | Soybean | cytosol | 55.96 | 56.88 |
| Solyc07g047950.1.1 | Tomato | mitochondrion | 55.42 | 56.33 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 55.42 | 56.33 |
| AT5G48150.4 | Thale cress | cytosol | 49.28 | 55.71 |
| CDY05700 | Canola | cytosol, plastid | 49.46 | 55.13 |
| Zm00001d048199_P001 | Maize | mitochondrion, nucleus | 53.25 | 55.04 |
| Zm00001d030500_P001 | Maize | nucleus | 53.61 | 54.8 |
| Bra020715.1-P | Field mustard | cytosol, plastid | 49.1 | 54.73 |
| CDY71174 | Canola | cytosol, plastid | 49.1 | 54.73 |
| Bra018860.1-P | Field mustard | nucleus | 51.81 | 54.67 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 48.92 | 54.53 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 48.92 | 54.53 |
| CDY19966 | Canola | cytosol | 48.56 | 54.45 |
| CDY00074 | Canola | cytosol, plastid | 48.74 | 54.33 |
| PGSC0003DMT400057111 | Potato | nucleus | 52.35 | 54.0 |
| Bra036185.1-P | Field mustard | cytosol | 48.01 | 53.74 |
| Solyc07g065270.1.1 | Tomato | nucleus | 51.81 | 53.35 |
| KRH11548 | Soybean | nucleus | 51.81 | 51.99 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 50.72 | 51.56 |
| KRH73868 | Soybean | cytosol | 50.54 | 51.38 |
| PGSC0003DMT400034763 | Potato | cytosol | 49.46 | 51.31 |
| KRG98562 | Soybean | nucleus | 50.36 | 51.19 |
| KRH36572 | Soybean | cytosol | 50.54 | 51.09 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 49.82 | 50.92 |
| KRH14274 | Soybean | cytosol | 50.0 | 50.83 |
| PGSC0003DMT400060553 | Potato | cytosol | 47.65 | 50.38 |
| KRH51175 | Soybean | cytosol | 48.56 | 49.63 |
| KRH46306 | Soybean | cytosol | 48.56 | 49.36 |
| Bra021063.1-P | Field mustard | plastid | 46.93 | 49.06 |
| CDY58168 | Canola | plastid | 46.93 | 49.06 |
| KRH01979 | Soybean | cytosol | 48.01 | 48.81 |
| CDY50128 | Canola | cytosol, plastid | 46.93 | 48.78 |
| CDY35589 | Canola | cytosol | 46.39 | 48.4 |
| AT4G17230.1 | Thale cress | cytosol | 46.21 | 48.39 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 48.01 | 48.1 |
| PGSC0003DMT400021748 | Potato | nucleus | 48.19 | 47.76 |
| Bra026237.1-P | Field mustard | plastid | 46.03 | 47.66 |
| CDY42968 | Canola | cytosol | 45.85 | 47.48 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 51.44 | 47.42 |
| KRH38269 | Soybean | cytosol | 27.98 | 43.91 |
| Zm00001d006551_P001 | Maize | golgi, mitochondrion | 44.4 | 39.87 |
| Zm00001d038225_P001 | Maize | cytosol | 37.0 | 36.54 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 19.86 | 33.03 |
| Zm00001d030744_P001 | Maize | cytosol | 22.92 | 25.81 |
| Zm00001d034664_P001 | Maize | plastid | 25.27 | 25.04 |
| Zm00001d051461_P001 | Maize | cytosol | 27.26 | 24.88 |
| Zm00001d026050_P001 | Maize | mitochondrion, nucleus, plastid | 25.81 | 22.95 |
| Zm00001d002573_P001 | Maize | cytosol | 25.81 | 22.95 |
| Zm00001d011070_P001 | Maize | cytosol | 25.81 | 22.81 |
| Zm00001d035671_P001 | Maize | cytosol | 25.63 | 22.68 |
| Zm00001d003553_P001 | Maize | cytosol | 23.83 | 21.75 |
| Zm00001d048588_P001 | Maize | cytosol | 24.19 | 21.14 |
| Zm00001d048601_P001 | Maize | cytosol | 24.37 | 21.03 |
| Zm00001d048600_P001 | Maize | nucleus | 23.83 | 20.47 |
| Zm00001d028603_P001 | Maize | cytosol | 26.53 | 20.03 |
| Zm00001d048681_P001 | Maize | cytosol | 20.22 | 19.68 |
| Zm00001d041536_P001 | Maize | cytosol | 24.55 | 19.15 |
| Zm00001d033166_P001 | Maize | nucleus | 25.27 | 19.13 |
| Zm00001d048602_P001 | Maize | cytosol | 22.92 | 19.07 |
| Zm00001d007248_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 18.59 | 19.04 |
| Zm00001d007713_P001 | Maize | cytosol | 20.58 | 19.03 |
| Zm00001d035670_P001 | Maize | cytosol | 24.91 | 19.01 |
| Zm00001d048682_P001 | Maize | nucleus | 20.76 | 18.28 |
| Zm00001d047813_P002 | Maize | nucleus | 26.17 | 17.49 |
| Zm00001d042907_P001 | Maize | cytosol | 25.45 | 17.43 |
| Zm00001d048604_P001 | Maize | cytosol | 23.65 | 17.12 |
| Zm00001d048603_P001 | Maize | cytosol | 26.17 | 10.19 |
Protein Annotations
| EntrezGene:100281447 | MapMan:15.5.12 | EMBL:BT063928 | UniProt:C0P6K9 | InterPro:CIGR2 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR005202 | EMBL:KJ726835 | ProteinID:ONM24745.1 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF31 | InterPro:TF_GRAS | UniParc:UPI0001948D9B | EnsemblPlantsGene:Zm00001d006701 | EnsemblPlants:Zm00001d006701_P001 | EnsemblPlants:Zm00001d006701_T001 |
| SEG:seg | : | : | : | : | : |
Description
GRAS-transcription factor 75GRAS transcription factor [Source:UniProtKB/TrEMBL;Acc:C0P6K9]
Coordinates
chr2:+:214683529..214685193
Molecular Weight (calculated)
60838.9 Da
IEP (calculated)
6.230
GRAVY (calculated)
-0.302
Length
554 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTPTSRMV HPFGDAPRQT PKQFLYSGNP QHLCHPYQSA PDTHVVLQRR YTVRSQSHSP NNAGSEDHET HKQYTLESSA ASGCSRHGSP SSQSVHAGSG
101: SPVSHDDSHS GSTNGHGSPV SASCVTGEDP TDLKQKLKDL EAVMLGTSET DPEIVNSLEI SAANQLSLEP EEWEHMVSMP RGNLKELLIA CARAVERNNS
201: YAIDLMITEL RKMVSVSGEP LERLGAYMVE GLVARLAASG SSIYKALKCK EPRSSDLLSY MHFLYEACPY FKFGYMSANG AIAEAIKGED RIHIIDFHIA
301: QGAQWVSLLQ ALAARPGGPP FVRVTGIDDS VSAYARGGGL ELVGRRLTHI AGLYKVPFQF DAVAISGSEV EEEHLGVVPG EAVAVNFTLE LHHIPDETVS
401: TANHRDRILR LVKGLSPKVL TLVEQESNTN TAPFAQRFAE TLDYYTAIFE SIDLALPRDD RERINIEQHC LAREIVNLVA CEGEERVERH EVFGKWKARL
501: MMAGFSPSPL SALVNATIKT LLQSYSPDYK LAERDGVLYL GWKNRPLIVS SAWH
101: SPVSHDDSHS GSTNGHGSPV SASCVTGEDP TDLKQKLKDL EAVMLGTSET DPEIVNSLEI SAANQLSLEP EEWEHMVSMP RGNLKELLIA CARAVERNNS
201: YAIDLMITEL RKMVSVSGEP LERLGAYMVE GLVARLAASG SSIYKALKCK EPRSSDLLSY MHFLYEACPY FKFGYMSANG AIAEAIKGED RIHIIDFHIA
301: QGAQWVSLLQ ALAARPGGPP FVRVTGIDDS VSAYARGGGL ELVGRRLTHI AGLYKVPFQF DAVAISGSEV EEEHLGVVPG EAVAVNFTLE LHHIPDETVS
401: TANHRDRILR LVKGLSPKVL TLVEQESNTN TAPFAQRFAE TLDYYTAIFE SIDLALPRDD RERINIEQHC LAREIVNLVA CEGEERVERH EVFGKWKARL
501: MMAGFSPSPL SALVNATIKT LLQSYSPDYK LAERDGVLYL GWKNRPLIVS SAWH
001: MRLSVFIIPL VESRQASGII NKQSTSLLIR FSLYLEASIS TKSFFSKSQR ISQTQSPICL SANYYQPDNL DMEATQKHMI QEGSSMFYHQ PSSVKQMDLS
101: VQTFDSYCTL ESSSGTKSHP CLNNKNNSSS TTSFSSNESP ISQANNNNLS RFNNHSPEEN NNSPLSGSSA TNTNETELSL MLKDLETAMM EPDVDNSYNN
201: QGGFGQQHGV VSSAMYRSME MISRGDLKGV LYECAKAVEN YDLEMTDWLI SQLQQMVSVS GEPVQRLGAY MLEGLVARLA SSGSSIYKAL RCKDPTGPEL
301: LTYMHILYEA CPYFKFGYES ANGAIAEAVK NESFVHIIDF QISQGGQWVS LIRALGARPG GPPNVRITGI DDPRSSFARQ GGLELVGQRL GKLAEMCGVP
401: FEFHGAALCC TEVEIEKLGV RNGEALAVNF PLVLHHMPDE SVTVENHRDR LLRLVKHLSP NVVTLVEQEA NTNTAPFLPR FVETMNHYLA VFESIDVKLA
501: RDHKERINVE QHCLAREVVN LIACEGVERE ERHEPLGKWR SRFHMAGFKP YPLSSYVNAT IKGLLESYSE KYTLEERDGA LYLGWKNQPL ITSCAWR
101: VQTFDSYCTL ESSSGTKSHP CLNNKNNSSS TTSFSSNESP ISQANNNNLS RFNNHSPEEN NNSPLSGSSA TNTNETELSL MLKDLETAMM EPDVDNSYNN
201: QGGFGQQHGV VSSAMYRSME MISRGDLKGV LYECAKAVEN YDLEMTDWLI SQLQQMVSVS GEPVQRLGAY MLEGLVARLA SSGSSIYKAL RCKDPTGPEL
301: LTYMHILYEA CPYFKFGYES ANGAIAEAVK NESFVHIIDF QISQGGQWVS LIRALGARPG GPPNVRITGI DDPRSSFARQ GGLELVGQRL GKLAEMCGVP
401: FEFHGAALCC TEVEIEKLGV RNGEALAVNF PLVLHHMPDE SVTVENHRDR LLRLVKHLSP NVVTLVEQEA NTNTAPFLPR FVETMNHYLA VFESIDVKLA
501: RDHKERINVE QHCLAREVVN LIACEGVERE ERHEPLGKWR SRFHMAGFKP YPLSSYVNAT IKGLLESYSE KYTLEERDGA LYLGWKNQPL ITSCAWR
Arabidopsis Description
SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.