Factsheet for Zm00001d006551_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97346	Sorghum	cytosol	86.87	94.04
GSMUA_Achr8P03610_001	Banana	cytosol	20.26	86.81
Os07t0545800-01	Rice	cytosol, nucleus	79.42	85.81
TraesCS2B01G239400.1	Wheat	cytosol	78.44	84.91
TraesCS2D01G220200.1	Wheat	cytosol	78.28	84.74
TraesCS2A01G214400.1	Wheat	cytosol	77.96	84.39
HORVU2Hr1G043780.1	Barley	cytosol	77.96	84.39
GSMUA_Achr6P24310_001	Banana	cytosol	59.64	68.78
Solyc06g035620.2.1	Tomato	cytosol	35.33	66.87
VIT_19s0014g04940.t01	Wine grape	cytosol	55.27	58.49
KRH55599	Soybean	plastid	53.16	57.75
KRH22210	Soybean	cytosol, plastid	53.81	57.54
KRH27129	Soybean	plastid	51.86	57.04
KRH25905	Soybean	cytosol, plastid	52.35	56.87
Solyc12g005340.1.1	Tomato	cytosol	50.41	55.73
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	46.68	55.38
PGSC0003DMT400056120	Potato	cytosol	50.08	55.28
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	51.38	54.37
PGSC0003DMT400049492	Potato	cytosol	51.05	54.12
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	44.57	47.17
Zm00001d048199_P001	Maize	mitochondrion, nucleus	40.19	46.27
Zm00001d006701_P001	Maize	cytosol	39.87	44.4
Zm00001d021946_P001	Maize	cytosol	40.03	44.27
Zm00001d030500_P001	Maize	nucleus	38.74	44.1
Zm00001d038225_P001	Maize	cytosol	33.71	37.08
Zm00001d030744_P001	Maize	cytosol	19.94	25.0
Zm00001d002573_P001	Maize	cytosol	23.01	22.79
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	22.69	22.47
Zm00001d051461_P001	Maize	cytosol	22.04	22.41
Zm00001d034664_P001	Maize	plastid	20.1	22.18
Zm00001d011070_P001	Maize	cytosol	21.07	20.73
Zm00001d048601_P001	Maize	cytosol	21.56	20.72
Zm00001d035671_P001	Maize	cytosol	20.91	20.61
Zm00001d003553_P001	Maize	cytosol	20.1	20.43
Zm00001d048681_P001	Maize	cytosol	18.48	20.04
Zm00001d048602_P001	Maize	cytosol	21.23	19.67
Zm00001d048588_P001	Maize	cytosol	20.1	19.56
Zm00001d007248_P001	Maize	cytosol, endoplasmic reticulum, nucleus	17.02	19.41
Zm00001d048600_P001	Maize	nucleus	19.94	19.07
Zm00001d007713_P001	Maize	cytosol	17.99	18.53
Zm00001d041536_P001	Maize	cytosol	21.23	18.45
Zm00001d048682_P001	Maize	nucleus	17.99	17.65
Zm00001d042907_P001	Maize	cytosol	22.85	17.43
Zm00001d033166_P001	Maize	nucleus	20.58	17.35
Zm00001d035670_P001	Maize	cytosol	20.26	17.22
Zm00001d028603_P001	Maize	cytosol	20.26	17.03
Zm00001d048604_P001	Maize	cytosol	20.91	16.86
Zm00001d047813_P002	Maize	nucleus	20.42	15.2
Zm00001d048603_P001	Maize	cytosol	21.72	9.42

Protein Annotations

MapMan:15.5.12	Gene3D:3.40.47.10	UniProt:A0A1D6EXP9	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0016747	InterPro:IPR005202	InterPro:IPR016039	ProteinID:ONM24219.1	PFAM:PF02803
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF18	SUPFAM:SSF53901	InterPro:TF_GRAS
TMHMM:TMhelix	InterPro:Thiolase-like	InterPro:Thiolase_C	UniParc:UPI00084426E0	EnsemblPlantsGene:Zm00001d006551	EnsemblPlants:Zm00001d006551_P001
EnsemblPlants:Zm00001d006551_T001	SEG:seg	:	:	:	:

Description

GRAS-transcription factor 49

Coordinates

chr2:+:210843272..210854196

Molecular Weight (calculated)

69194.7 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.320

Length

617 amino acids

Sequence
(BLAST)

001: MKIYVALKKG LSILSVSRSF AVVGVDLAVM GVGPAVAIPA TVKSTILEVG NIDLFELNEV FASQFVYYCK NNLANTPWPA SPLKSEFSSS SYTPLSSQLE
101: CDNLSALSNT PDNQSSTETI SAQSISPLEV DSSYKQAAIL RENTQVRPDP LYTTSRHNMQ HALREIETVL MAPDADDAAT STKHEFEEHK PAQLMRQRSR
201: TWSHESRQPS PGVVRTQLAS GYPTASYEFR PEKRLRELRE DPQSMVKQLL TKCAEALSEE RIEEFLNLVQ QARGVVSITG EPIQRLGAYL LEGLVARHAN
301: SGTNIYRALK CREPESNELL SYMKILYNIC PYLKFGYMAA NGAIAEALRN EDRIHIIDFQ IAQGTQWITL IQALAARPGG PPHVRITGID DPVSEYARGE
401: GLDLVGKMLK SMSEEFRIPL EFTPLPGIYA TQVTKEMLDI RSGEALAVNF TLQLHHTPDE SVDVNNPRDG LLRMVKGLSP KVTTLVEQES HTNTTPFLMR
501: FTETLDYYSA MFESIDTNLP RDNKERINVE QHCLAKDIVN IIACEGKDRV ERHELLGKWR SRLTMAGFRP YPLSSYVNSV IRKLLACYSD KYTLEEKDGA
601: MLLGWKNRKL ISASAWH

Best Arabidopsis Sequence Match ( AT5G48150.3 )
(BLAST)

001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK

Arabidopsis Description

PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.