Factsheet for Solyc07g063940.1.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049492	Potato	cytosol	95.03	95.19
GSMUA_Achr8P03610_001	Banana	cytosol	19.38	78.47
Solyc06g035620.2.1	Tomato	cytosol	43.74	78.22
Solyc12g005340.1.1	Tomato	cytosol	71.36	74.55
VIT_19s0014g04940.t01	Wine grape	cytosol	71.01	71.01
KRH55599	Soybean	plastid	65.87	67.61
KRH22210	Soybean	cytosol, plastid	66.21	66.9
KRH27129	Soybean	plastid	63.81	66.31
KRH25905	Soybean	cytosol, plastid	64.32	66.02
GSMUA_Achr6P24310_001	Banana	cytosol	54.72	59.63
EER97346	Sorghum	cytosol	54.72	55.96
HORVU2Hr1G043780.1	Barley	cytosol	54.55	55.79
Os07t0545800-01	Rice	cytosol, nucleus	54.2	55.34
TraesCS2B01G239400.1	Wheat	cytosol	53.86	55.09
TraesCS2D01G220200.1	Wheat	cytosol	53.69	54.91
TraesCS2A01G214400.1	Wheat	cytosol	53.34	54.56
Zm00001d006551_P001	Maize	golgi, mitochondrion	54.37	51.38
Solyc07g047950.1.1	Tomato	mitochondrion	45.97	49.17
Solyc07g065270.1.1	Tomato	nucleus	44.77	48.51
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	40.99	45.96
Solyc11g012510.1.1	Tomato	mitochondrion	42.2	45.39
Solyc04g014830.1.1	Tomato	mitochondrion	39.45	41.59
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	40.48	40.48
Solyc04g064550.1.1	Tomato	mitochondrion	35.68	36.94
Solyc04g011630.1.1	Tomato	cytosol	9.61	32.94
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	16.81	29.43
Solyc03g025170.1.1	Tomato	nucleus	27.27	25.2
Solyc06g036170.1.1	Tomato	nucleus	25.39	24.75
Solyc01g100200.2.1	Tomato	nucleus	23.5	20.57
Solyc06g082530.1.1	Tomato	cytosol	22.47	20.06
Solyc06g076280.1.1	Tomato	cytosol	24.7	19.25
Solyc05g053090.1.1	Tomato	cytosol	24.53	19.25
Solyc09g010920.1.1	Tomato	cytosol	24.36	18.66
Solyc10g086530.1.1	Tomato	cytosol	23.16	17.74

Protein Annotations

MapMan:15.5.12	ncoils:Coil	EMBL:DQ399825	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF18	UniProt:Q00LP6	EnsemblPlantsGene:Solyc07g063940.1	EnsemblPlants:Solyc07g063940.1.1	InterPro:TF_GRAS
UniParc:UPI0000E583DB	SEG:seg	:	:	:	:

Description

GRAS2 [Source:UniProtKB/TrEMBL;Acc:Q00LP6]

Coordinates

chr7:-:66264913..66266664

Molecular Weight (calculated)

64970.0 Da

IEP (calculated)

6.282

GRAVY (calculated)

-0.334

Length

583 amino acids

Sequence
(BLAST)

001: MESHNLYGYG ATDVNLPYSY SMTTTPSIPN RLLGILKFDS GNSPNSPFAN YNDPGTPTTL SDSLEQHSST ENISGTSPCS NSSRDYNHYF CRPSPSPDIH
101: HNNLLVYSGD NSLLQYANHS HNMKHALLQL ETALMGPEEV TTSSPSAGEI QQPQASGGQR SGMWHQDGQV PYRIETQPSH VSVFGISGDI IQSEEHHKPM
201: VDYPSQGIPF GNLKELLIAC ARALAENNLD DFEKLIAKAR SAVSITGDPI QRLGAYIVEG LVARKEASGT NIYRALRCKE PAGWDLLSYM HILYEICPYL
301: KFGYMAANGA IADACRNENR IHIIDFQIAQ GTQWLTLLQA LAARPSGAPY VRITGIDDPV SKYARGDGLA VVGKKLAAIS EKFNIPVEFH AVPVFAPEVT
401: RDMLDVRPGE ALAVNFPLTL HHTPDESVDV TNPRDELLRM VKSFSPKVVT LVEQESNTNT APFFPRFQEA LDYYSAMFES IDVTLERDRK ERINVEQHCL
501: ARDIVNVIAC EGMERVERHE LLGKWKLRFT MAGFHQYPLS SYVNSVIKSL MRCYSEHYTL VEKDGAMLLG WKKRNLISAS AWH

Best Arabidopsis Sequence Match ( AT5G48150.3 )
(BLAST)

001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK

Arabidopsis Description

PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.