Factsheet for Solyc01g100200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	91.59	94.43
CDX68389	Canola	cytosol	7.96	62.35
Solyc04g011630.1.1	Tomato	cytosol	15.47	60.59
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	27.03	56.78
CDX80265	Canola	endoplasmic reticulum, golgi	26.88	56.47
VIT_06s0004g04990.t01	Wine grape	cytosol	36.94	55.66
Bra033813.1-P	Field mustard	nucleus	41.59	47.59
CDX82987	Canola	nucleus	42.04	46.59
AT3G46600.1	Thale cress	cytosol	40.69	46.48
AT5G59450.1	Thale cress	nucleus	42.19	46.07
CDY33040	Canola	nucleus	41.29	46.06
VIT_06s0004g04970.t01	Wine grape	cytosol	44.89	45.44
Solyc06g082530.1.1	Tomato	cytosol	43.99	44.87
VIT_06s0004g04980.t01	Wine grape	nucleus	47.3	44.74
TraesCS1B01G037500.1	Wheat	cytosol	27.63	44.55
KRH10240	Soybean	cytosol	40.09	44.06
KRH29771	Soybean	cytosol	44.44	43.53
HORVU3Hr1G012520.1	Barley	cytosol	29.73	43.42
CDX68388	Canola	cytosol	26.88	43.24
KRH24773	Soybean	nucleus	44.14	42.79
Zm00001d034664_P001	Maize	plastid	35.74	42.58
KRH23094	Soybean	cytosol	35.29	42.5
KRH23095	Soybean	cytosol	41.14	41.7
HORVU5Hr1G113620.1	Barley	cytosol, nucleus, peroxisome	39.34	40.68
Os04t0590400-01	Rice	cytosol, nucleus, peroxisome	38.74	40.57
GSMUA_Achr10P...	Banana	cytosol	36.19	40.23
TraesCS5B01G494500.1	Wheat	cytosol	39.34	39.88
TraesCS5D01G494900.1	Wheat	cytosol	39.34	39.88
TraesCS5A01G481300.1	Wheat	cytosol	39.19	39.85
GSMUA_Achr10P...	Banana	nucleus	26.43	39.82
KXG37250	Sorghum	cytosol	38.44	39.32
Solyc06g076280.1.1	Tomato	cytosol	43.09	38.37
GSMUA_Achr6P34090_001	Banana	nucleus	34.38	37.42
GSMUA_Achr7P15080_001	Banana	cytosol	33.18	36.96
Zm00001d028603_P001	Maize	cytosol	40.69	36.92
KXG38103	Sorghum	cytosol	34.68	36.9
Solyc10g086530.1.1	Tomato	cytosol	42.04	36.79
Solyc09g010920.1.1	Tomato	cytosol	42.04	36.79
KXG21079	Sorghum	cytosol	34.38	36.76
OQU92829	Sorghum	cytosol	40.39	36.65
Solyc05g053090.1.1	Tomato	cytosol	40.84	36.61
Os03t0690600-03	Rice	cytosol	40.09	36.53
Zm00001d011070_P001	Maize	cytosol	34.08	36.2
KXG21080	Sorghum	cytosol	33.78	35.94
Zm00001d035671_P001	Maize	cytosol	33.48	35.62
HORVU3Hr1G012550.6	Barley	cytosol	31.68	35.4
GSMUA_Achr8P02550_001	Banana	nucleus	20.57	34.95
TraesCS5A01G139000.1	Wheat	cytosol, plastid	38.89	33.38
TraesCS5D01G152700.1	Wheat	cytosol, plastid	38.74	33.33
TraesCS5B01G138100.1	Wheat	cytosol, plastid	38.59	33.12
TraesCS1B01G037300.1	Wheat	cytosol	34.98	33.1
HORVU5Hr1G045020.29	Barley	cytosol	39.04	33.04
Zm00001d047813_P002	Maize	nucleus	40.69	32.69
GSMUA_AchrUn_...	Banana	cytosol	32.28	32.63
Solyc06g035620.2.1	Tomato	cytosol	15.77	32.21
TraesCS3D01G067900.1	Wheat	nucleus	33.33	32.17
TraesCS1D01G030800.1	Wheat	cytosol	33.78	32.1
TraesCS1D01G030900.1	Wheat	cytosol	34.23	31.98
TraesCS1A01G030300.1	Wheat	cytosol	33.63	31.73
TraesCS3A01G068000.1	Wheat	nucleus	33.93	31.56
OQU91407	Sorghum	nucleus	32.43	31.49
TraesCS1D01G031000.1	Wheat	cytosol	34.23	31.45
TraesCS1A01G030200.1	Wheat	cytosol	33.78	31.21
TraesCS3B01G081100.1	Wheat	nucleus	33.33	31.05
TraesCS3D01G067700.1	Wheat	cytosol	33.63	31.02
Zm00001d035670_P001	Maize	cytosol	33.63	30.85
TraesCS1B01G037400.1	Wheat	cytosol	33.48	30.84
TraesCS3A01G067900.1	Wheat	cytosol	33.33	30.75
TraesCS3B01G080900.1	Wheat	nucleus	33.18	30.65
HORVU1Hr1G004440.1	Barley	cytosol	32.88	30.46
EES18882	Sorghum	cytosol	33.48	30.42
Zm00001d033166_P001	Maize	nucleus	33.33	30.33
TraesCS1D01G031200.1	Wheat	cytosol	33.18	30.32
EER91260	Sorghum	nucleus	32.73	30.24
TraesCS3D01G067800.1	Wheat	nucleus	30.03	29.59
TraesCS3B01G081000.1	Wheat	cytosol	32.28	29.53
KXG38064	Sorghum	nucleus	31.83	29.44
EES18880	Sorghum	cytosol	32.43	29.15
OQU91406	Sorghum	nucleus	32.43	28.88
TraesCS1B01G037200.1	Wheat	nucleus	31.38	27.61
Solyc11g012510.1.1	Tomato	mitochondrion	21.02	25.83
Solyc07g047950.1.1	Tomato	mitochondrion	20.87	25.5
Solyc07g065270.1.1	Tomato	nucleus	20.57	25.46
Solyc04g014830.1.1	Tomato	mitochondrion	20.57	24.77
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	20.57	23.5
Solyc12g005340.1.1	Tomato	cytosol	19.67	23.48
Solyc04g064550.1.1	Tomato	mitochondrion	17.42	20.6
Solyc06g036170.1.1	Tomato	nucleus	16.67	18.56
Solyc03g025170.1.1	Tomato	nucleus	17.12	18.07
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	7.96	15.92

Protein Annotations

MapMan:15.5.12	EMBL:DQ399826	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF56
UniProt:Q00LP5	EnsemblPlantsGene:Solyc01g100200.2	EnsemblPlants:Solyc01g100200.2.1	InterPro:TF_GRAS	UniParc:UPI0000E583DC	:

Description

GRAS4 [Source:UniProtKB/TrEMBL;Acc:Q00LP5]

Coordinates

chr1:-:90259397..90261861

Molecular Weight (calculated)

75741.8 Da

IEP (calculated)

6.762

GRAVY (calculated)

-0.491

Length

666 amino acids

Sequence
(BLAST)

001: MEALFQEQLF PCADSFIFRH PSIPMDPRKE VIQNGLNNHP SFDQDYFSNH VVGVGDSSPP PQEEGEKDYS DAMYKFLSQM LMEEDDLENK PCMFHDCMAL
101: QAKERYLSDV LHGSENNYSP QSVIINPHDS SSFLSNYSPD SIESPQWDLN FESPASMSTL SNHDSFFTSF GNGHFEEGAV NVLQSGSSSN SPTGLREKKN
201: RHRGDVAADQ QRSNKQMATF VHDESEPLEM YDNVLLCLNN PYVEQHSATS ITSYSPPNEA KKTSKVGRPR GGRKHSSIVK KEMVDLRALL TQCAQAMANY
301: DSRTANELLM RIREHSTPHG DGTERLAHYL ANALEARLSG TGTALYTAYA PSRISAANIL KAYKAFIRAC PFKLLSNIFA NKYIRKVIAG APKIHIIDFG
401: ILYGFQWPCL IQGLSMRAGG PPELRITGID LPQPGFKPAG RVEETGRRLE KYCKRFSVPF VFKAIAKKWE SITLEELEVQ RDEVLVVNSL YRLGNIPDET
501: VVPNSPRDAV LNLIRRIRPD LFIHGALNGT FNTPFFVTRF REALFHFSSL YDMFEATLPR EDEDRKLFEE EVFARDAMNV IACEGTERVE RPETYKQWQL
601: RCVRAGFKQV PLDQEIVKIV RNKVRSEYHR DFSVDEDGHW MLQGWKGRVI YALSCWKPTK QSVKLV

Best Arabidopsis Sequence Match ( AT2G29060.2 )
(BLAST)

001: MGSYSAGFPG SLDWFDFPGL GNGSYLNDQP LLDIGSVPPP LDPYPQQNLA SADADFSDSV LKYISQVLME EDMEDKPCMF HDALSLQAAE KSLYEALGEK
101: YPVDDSDQPL TTTTSLAQLT PIPSNFIFQS TSTRASSGNA VFGSSFSGDL VSNMFNDTDL ALQFKKGMEE ASKFLPKSSQ LVIDNSVPNR LTGKKSHWRE
201: EEHLTEERSK KQSAIYVDET DELTDMFDNI LIFGEAKEQP VCILNESFPK EPAKASTFSK SPKGEKPEAS GNSYTKETPD LRTMLVSCAQ AVSINDRRTA
301: DELLSRIRQH SSSYGDGTER LAHYFANSLE ARLAGIGTQV YTALSSKKTS TSDMLKAYQT YISVCPFKKI AIIFANHSIM RLASSANAKT IHIIDFGISD
401: GFQWPSLIHR LAWRRGSSCK LRITGIELPQ RGFRPAEGVI ETGRRLAKYC QKFNIPFEYN AIAQKWESIK LEDLKLKEGE FVAVNSLFRF RNLLDETVAV
501: HSPRDTVLKL IRKIKPDVFI PGILSGSYNA PFFVTRFREV LFHYSSLFDM CDTNLTREDP MRVMFEKEFY GREIMNVVAC EGTERVERPE SYKQWQARAM
601: RAGFRQIPLE KELVQKLKLM VESGYKPKEF DVDQDCHWLL QGWKGRIVYG SSIWVPL

Arabidopsis Description

SCL33Scarecrow-like protein 33 [Source:UniProtKB/Swiss-Prot;Acc:P0C883]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.