Factsheet for VIT_06s0004g04970.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g04990.t01	Wine grape	cytosol	45.14	67.19
VIT_06s0004g04980.t01	Wine grape	nucleus	65.35	61.08
CDX68389	Canola	cytosol	6.84	52.94
Bra002564.1-P	Field mustard	endoplasmic reticulum, golgi	25.23	52.37
CDX80265	Canola	endoplasmic reticulum, golgi	24.92	51.73
TraesCS1B01G037500.1	Wheat	cytosol	29.64	47.22
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	45.29	46.13
VIT_13s0019g01780.t01	Wine grape	nucleus	41.64	45.67
GSMUA_Achr10P...	Banana	nucleus	30.55	45.48
VIT_08s0007g00510.t01	Wine grape	cytosol, plastid	48.63	45.13
KRH10240	Soybean	cytosol	41.49	45.05
Zm00001d034664_P001	Maize	plastid	38.15	44.9
Solyc01g100200.2.1	Tomato	nucleus	45.44	44.89
Solyc06g082530.1.1	Tomato	cytosol	44.53	44.87
KRH29771	Soybean	cytosol	45.9	44.41
KRH24773	Soybean	nucleus	46.2	44.25
PGSC0003DMT400078286	Potato	nucleus	44.38	43.78
VIT_13s0019g01810.t01	Wine grape	cytosol	49.7	43.72
KRH23095	Soybean	cytosol	43.62	43.68
AT3G46600.1	Thale cress	cytosol	37.99	42.88
VIT_13s0019g01710.t01	Wine grape	cytosol	47.26	42.78
Bra033813.1-P	Field mustard	nucleus	37.69	42.61
HORVU3Hr1G012520.1	Barley	cytosol	29.33	42.32
KRH23094	Soybean	cytosol	35.56	42.31
KXG37250	Sorghum	cytosol	41.49	41.94
GSMUA_Achr10P...	Banana	cytosol	37.69	41.4
Os04t0590400-01	Rice	cytosol, nucleus, peroxisome	39.97	41.35
CDY33040	Canola	nucleus	37.23	41.04
CDX82987	Canola	nucleus	37.39	40.93
VIT_13s0019g01790.t01	Wine grape	cytosol	44.53	40.75
VIT_06s0004g04950.t01	Wine grape	cytosol	46.5	40.58
Zm00001d011070_P001	Maize	cytosol	38.6	40.51
GSMUA_Achr7P15080_001	Banana	cytosol	36.63	40.3
VIT_13s0019g01700.t01	Wine grape	cytosol	46.5	40.26
AT5G59450.1	Thale cress	nucleus	37.23	40.16
KXG38103	Sorghum	cytosol	37.99	39.94
HORVU5Hr1G113620.1	Barley	cytosol, nucleus, peroxisome	39.06	39.91
GSMUA_Achr8P02550_001	Banana	nucleus	23.71	39.8
KXG21080	Sorghum	cytosol	37.54	39.46
TraesCS5D01G494900.1	Wheat	cytosol	39.36	39.42
Os03t0690600-03	Rice	cytosol	43.77	39.4
Zm00001d028603_P001	Maize	cytosol	43.92	39.37
TraesCS5B01G494500.1	Wheat	cytosol	39.21	39.27
OQU92829	Sorghum	cytosol	43.77	39.24
TraesCS5A01G481300.1	Wheat	cytosol	38.91	39.08
KXG21079	Sorghum	cytosol	36.93	39.0
GSMUA_Achr6P34090_001	Banana	nucleus	36.17	38.89
CDX68388	Canola	cytosol	24.16	38.41
Zm00001d035671_P001	Maize	cytosol	36.17	38.02
VIT_06s0004g04960.t01	Wine grape	nucleus	44.83	37.01
HORVU3Hr1G012550.6	Barley	cytosol	32.52	35.91
TraesCS5D01G152700.1	Wheat	cytosol, plastid	42.1	35.79
HORVU5Hr1G045020.29	Barley	cytosol	42.71	35.71
TraesCS5A01G139000.1	Wheat	cytosol, plastid	42.1	35.7
TraesCS5B01G138100.1	Wheat	cytosol, plastid	41.95	35.57
TraesCS1B01G037300.1	Wheat	cytosol	37.39	34.94
TraesCS1D01G031000.1	Wheat	cytosol	38.45	34.9
Zm00001d047813_P002	Maize	nucleus	43.77	34.74
TraesCS1A01G030300.1	Wheat	cytosol	36.93	34.42
TraesCS1D01G030800.1	Wheat	cytosol	36.63	34.38
TraesCS1A01G030200.1	Wheat	cytosol	37.54	34.26
TraesCS1D01G030900.1	Wheat	cytosol	37.08	34.22
GSMUA_AchrUn_...	Banana	cytosol	34.19	34.14
OQU91407	Sorghum	nucleus	35.26	33.82
HORVU1Hr1G004440.1	Barley	cytosol	36.47	33.38
TraesCS3D01G067900.1	Wheat	nucleus	34.8	33.19
TraesCS1D01G031200.1	Wheat	cytosol	36.63	33.06
TraesCS1B01G037400.1	Wheat	cytosol	36.17	32.92
EER91260	Sorghum	nucleus	35.71	32.59
TraesCS3B01G081100.1	Wheat	nucleus	35.26	32.45
Zm00001d033166_P001	Maize	nucleus	36.02	32.38
TraesCS3A01G068000.1	Wheat	nucleus	35.11	32.26
OQU91406	Sorghum	nucleus	36.47	32.09
KXG38064	Sorghum	nucleus	35.11	32.08
Zm00001d035670_P001	Maize	cytosol	35.26	31.96
EES18882	Sorghum	cytosol	35.11	31.51
TraesCS3D01G067800.1	Wheat	nucleus	32.07	31.21
TraesCS3D01G067700.1	Wheat	cytosol	34.19	31.16
TraesCS3B01G080900.1	Wheat	nucleus	33.74	30.79
TraesCS1B01G037200.1	Wheat	nucleus	35.41	30.78
TraesCS3A01G067900.1	Wheat	cytosol	33.74	30.75
TraesCS3B01G081000.1	Wheat	cytosol	33.89	30.63
EES18880	Sorghum	cytosol	34.04	30.23
VIT_19s0090g01740.t01	Wine grape	cytosol	21.28	25.69
VIT_00s0463g00020.t01	Wine grape	nucleus	20.67	24.95
VIT_12s0057g00560.t01	Wine grape	cytosol	20.36	24.59
VIT_19s0014g04940.t01	Wine grape	cytosol	21.12	23.84
VIT_04s0044g01370.t01	Wine grape	nucleus	20.21	23.42
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	19.76	23.01
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	17.78	19.86

Protein Annotations

EntrezGene:100257123	wikigene:100257123	MapMan:15.5.12	ProteinID:CCB43559	ProteinID:CCB43559.1	UniProt:F6GV00
EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR005202	EntrezGene:LOC100257123	wikigene:LOC100257123	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF56	InterPro:TF_GRAS	UniParc:UPI00015C745B	ArrayExpress:VIT_06s0004g04970	EnsemblPlantsGene:VIT_06s0004g04970	EnsemblPlants:VIT_06s0004g04970.t01
RefSeq:XP_002280780	RefSeq:XP_002280780.1	RefSeq:XP_019075956.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:5930838..5932814

Molecular Weight (calculated)

74605.8 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.500

Length

658 amino acids

Sequence
(BLAST)

001: MDSIPRKFSG SKNGQKLYHE SVSINSDHNV VERFMDPPFL PTKSHPYNSA TVSGARLEED SAEDCELSIA MLKYMGEILM EDELEDKNCM FQDCVALLAA
101: EKSFYDVLGN RSPPQPPPNP PPYHVHLHSP DDASVLGCSS SSGNSNAAAN NFVEFEMVEL GQLEASRVPT PLVNHILQPN TWIPFEENDA EADRRSYSSN
201: GPRGRKNQHP DEGDDSQGRC SKHSALYTEE PDEPSDEMFD SALLPRDGEA GKKLHQNEQS KGSNGKAGRV KKKHNKGELV DLNALLIQCA QAVAAYNQRA
301: ANDILKLIRQ HSSPFGNGSQ RLAHFFANSL EARLAGTGLQ MYTALATKRT SVADVIKAYQ LYVSACPFKR MSNRYANRVI AKLAEGATRL HIIDFGVLYG
401: FQWPCLIQFL SLRPGGPPKL RITGIDFPQP GFRPAERVEE TGRRLANYCK RFKVPFEYKA IAQRWETIKV EDLEIDRDGV LVVNSIYRMK NLLDETVTDK
501: CLKDAVLELI RRINPDIFIH GVLNGNFNTP FFFTRFREAL FHFDALFDML DASVPREDEG RMMFEREIYG KDIMNIIACE GSERIERPDI YKQWQARNER
601: AGLRQLPLEQ EILMKVRNIV KMDYHKDFVV EVDGGWMLHG WKGRVIYAIS CWKPCHHL

Best Arabidopsis Sequence Match ( AT1G07530.1 )
(BLAST)

001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS

Arabidopsis Description

SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.