Factsheet for VIT_04s0044g01370.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P11780_001	Banana	cytosol	45.42	75.44
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	50.53	70.34
GSMUA_Achr10P...	Banana	cytosol	65.49	67.39
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	63.03	63.36
GSMUA_Achr3P02410_001	Banana	nucleus	63.56	61.5
CDY61060	Canola	cytosol	56.16	59.18
CDY00377	Canola	cytosol	56.51	58.36
Bra012280.1-P	Field mustard	cytosol	56.34	58.29
Os01t0881500-01	Rice	cytosol	56.51	58.05
HORVU3Hr1G091250.1	Barley	cytosol	55.63	57.25
TraesCS3A01G408000.1	Wheat	cytosol	55.63	57.25
TraesCS3B01G441600.1	Wheat	cytosol	55.63	57.25
TraesCS3D01G403100.1	Wheat	cytosol	55.63	57.25
CDY68224	Canola	cytosol	57.39	56.6
CDY50240	Canola	cytosol	57.39	56.6
EES18257	Sorghum	cytosol	55.63	56.13
KXG33821	Sorghum	cytosol	55.81	55.71
AT1G21450.1	Thale cress	nucleus	58.1	55.65
Zm00001d038225_P001	Maize	cytosol	52.11	52.76
VIT_19s0090g01740.t01	Wine grape	cytosol	42.61	44.4
VIT_12s0057g00560.t01	Wine grape	cytosol	42.43	44.22
VIT_00s0463g00020.t01	Wine grape	nucleus	39.79	41.47
VIT_19s0014g04940.t01	Wine grape	cytosol	40.49	39.45
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	33.1	31.92
VIT_06s0004g04990.t01	Wine grape	cytosol	21.13	27.15
VIT_13s0019g01780.t01	Wine grape	nucleus	23.42	22.17
VIT_06s0004g04970.t01	Wine grape	cytosol	23.42	20.21
VIT_13s0019g01810.t01	Wine grape	cytosol	25.7	19.52
VIT_13s0019g01710.t01	Wine grape	cytosol	24.65	19.26
VIT_08s0007g00510.t01	Wine grape	cytosol, plastid	23.59	18.9
VIT_06s0004g04980.t01	Wine grape	nucleus	23.42	18.89
VIT_13s0019g01790.t01	Wine grape	cytosol	23.42	18.5
VIT_06s0004g04950.t01	Wine grape	cytosol	24.47	18.43
VIT_13s0019g01700.t01	Wine grape	cytosol	23.59	17.63
VIT_06s0004g04960.t01	Wine grape	nucleus	23.42	16.69

Protein Annotations

EntrezGene:100854518	wikigene:100854518	MapMan:15.5.12	EMBL:AM434029	ProteinID:CAN73735	ProteinID:CAN73735.1
ProteinID:CCB60407	ProteinID:CCB60407.1	UniProt:F6I0E1	EMBL:FN596506	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	EntrezGene:LOC100854518	wikigene:LOC100854518
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF10	InterPro:Scarecrow-like_1	InterPro:TF_GRAS
UniParc:UPI00021094A1	ArrayExpress:VIT_04s0044g01370	EnsemblPlantsGene:VIT_04s0044g01370	EnsemblPlants:VIT_04s0044g01370.t01	RefSeq:XP_003631928	RefSeq:XP_003631928.1
RefSeq:XP_010649367.1	RefSeq:XP_019075083.1	RefSeq:XP_019075084.1	RefSeq:XP_019075085.1	SEG:seg	:

Description

No Description!

Coordinates

chr4:-:22903140..22907007

Molecular Weight (calculated)

62620.2 Da

IEP (calculated)

5.675

GRAVY (calculated)

-0.333

Length

568 amino acids

Sequence
(BLAST)

001: MSLIRPADSS APSYGESRIY QAKGSSNPSG LSTQMYSSNK QKFKHVTESN HLDSYNQQSF PESSTAELHA LQANVYHPSN SGVPGGAFCP QVSCSSATAH
101: NSYLEKILDP IDSGEDNIRL KLRELESALL NDNDEDDYYY NGGISGPEHN MNIDSEWADS IKDILLLPNS PKDSSSDSNL SYICSNKETS ACTSRPTTPK
201: QMLFNCAAAL SEGNMEQAST IIATLRRMVS IQGDPPQRIA AYMVEGLAAR MAASGQGLYR ALKCKEPPTS DRLSAMQILF EVCPCFKFGF MAANGAITEA
301: FKGEKGVHII DFDINQGSQY ITLIQALAAQ PAKPCVRITG VDDPESVQRK VGGLKIIGQR LEQLAEACGV PFEFRAIAAK TADITPSMLN CLPGEALLVN
401: CAFQLHHMPD ESVSTVNQRD QLLRMIKSLT PKLVTVVEQD VNTNTAPFFP RFIEAYNYYS AVFESLDATL PRENPDRINV EKHCLARDIV NIVACEGEER
501: IERYEVAGKW RARMTMAGFR PCPLSSSVNN SIQELLKQYC NRYKVKQEGG ALHFGWEDKI LIVASAWR

Best Arabidopsis Sequence Match ( AT1G21450.1 )
(BLAST)

001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR

Arabidopsis Description

SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.