Factsheet for VIT_13s0019g01810.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g011630.1.1	Tomato	cytosol	16.04	70.59
VIT_13s0019g01700.t01	Wine grape	cytosol	68.98	67.89
VIT_13s0019g01780.t01	Wine grape	nucleus	53.48	66.67
VIT_13s0019g01790.t01	Wine grape	cytosol	63.37	65.92
VIT_13s0019g01710.t01	Wine grape	cytosol	63.64	65.47
VIT_08s0007g00510.t01	Wine grape	cytosol, plastid	56.42	59.52
PGSC0003DMT400016258	Potato	cytosol	57.49	59.07
PGSC0003DMT400069949	Potato	cytosol	56.28	56.36
Solyc05g053090.1.1	Tomato	cytosol	55.62	55.99
VIT_06s0004g04990.t01	Wine grape	cytosol	32.62	55.2
GSMUA_Achr10P...	Banana	nucleus	31.95	54.07
GSMUA_Achr10P...	Banana	cytosol	42.11	52.59
GSMUA_Achr7P15080_001	Banana	cytosol	40.24	50.33
OQU92829	Sorghum	cytosol	49.33	50.27
Zm00001d028603_P001	Maize	cytosol	49.06	50.0
Zm00001d034664_P001	Maize	plastid	37.17	49.73
VIT_06s0004g04970.t01	Wine grape	cytosol	43.72	49.7
Os03t0690600-03	Rice	cytosol	48.4	49.52
VIT_06s0004g04980.t01	Wine grape	nucleus	46.26	49.15
VIT_06s0004g04950.t01	Wine grape	cytosol	49.33	48.94
GSMUA_Achr8P02550_001	Banana	nucleus	25.4	48.47
TraesCS1B01G037500.1	Wheat	cytosol	26.74	48.43
Os04t0590400-01	Rice	cytosol, nucleus, peroxisome	40.51	47.64
HORVU3Hr1G012520.1	Barley	cytosol	28.34	46.49
KXG37250	Sorghum	cytosol	39.97	45.93
TraesCS5A01G139000.1	Wheat	cytosol, plastid	47.46	45.75
TraesCS5D01G152700.1	Wheat	cytosol, plastid	47.19	45.61
GSMUA_Achr6P34090_001	Banana	nucleus	37.17	45.42
TraesCS5B01G138100.1	Wheat	cytosol, plastid	47.06	45.36
KXG38103	Sorghum	cytosol	37.83	45.21
VIT_06s0004g04960.t01	Wine grape	nucleus	48.13	45.17
HORVU5Hr1G113620.1	Barley	cytosol, nucleus, peroxisome	38.77	45.03
HORVU5Hr1G045020.29	Barley	cytosol	47.33	44.98
TraesCS5D01G494900.1	Wheat	cytosol	39.3	44.75
TraesCS5B01G494500.1	Wheat	cytosol	39.17	44.6
TraesCS5A01G481300.1	Wheat	cytosol	39.04	44.58
Zm00001d011070_P001	Maize	cytosol	37.3	44.5
Zm00001d035671_P001	Maize	cytosol	37.17	44.41
KXG21080	Sorghum	cytosol	36.9	44.09
KXG21079	Sorghum	cytosol	36.63	43.98
Zm00001d047813_P002	Maize	nucleus	48.26	43.55
GSMUA_AchrUn_...	Banana	cytosol	36.76	41.73
HORVU3Hr1G012550.6	Barley	cytosol	33.02	41.44
TraesCS1B01G037300.1	Wheat	cytosol	36.9	39.2
TraesCS1D01G030900.1	Wheat	cytosol	36.76	38.57
HORVU1Hr1G004440.1	Barley	cytosol	36.36	37.83
TraesCS1A01G030300.1	Wheat	cytosol	35.7	37.82
TraesCS3D01G067900.1	Wheat	nucleus	34.63	37.54
TraesCS1D01G030800.1	Wheat	cytosol	35.03	37.38
Zm00001d035670_P001	Maize	cytosol	35.7	36.78
OQU91407	Sorghum	nucleus	33.69	36.73
TraesCS1B01G037400.1	Wheat	cytosol	35.29	36.51
TraesCS1D01G031000.1	Wheat	cytosol	35.29	36.41
TraesCS3D01G067800.1	Wheat	nucleus	32.89	36.39
EER91260	Sorghum	nucleus	34.89	36.2
TraesCS3B01G081100.1	Wheat	nucleus	34.49	36.08
TraesCS1A01G030200.1	Wheat	cytosol	34.76	36.06
TraesCS3B01G080900.1	Wheat	nucleus	34.76	36.06
TraesCS3B01G081000.1	Wheat	cytosol	35.03	35.99
TraesCS1D01G031200.1	Wheat	cytosol	35.03	35.94
Zm00001d033166_P001	Maize	nucleus	35.03	35.79
TraesCS3A01G068000.1	Wheat	nucleus	34.22	35.75
TraesCS3D01G067700.1	Wheat	cytosol	34.22	35.46
EES18882	Sorghum	cytosol	34.49	35.2
TraesCS3A01G067900.1	Wheat	cytosol	33.82	35.04
KXG38064	Sorghum	nucleus	33.69	35.0
OQU91406	Sorghum	nucleus	34.89	34.89
EES18880	Sorghum	cytosol	34.22	34.55
TraesCS1B01G037200.1	Wheat	nucleus	33.82	33.42
VIT_19s0090g01740.t01	Wine grape	cytosol	21.66	29.72
VIT_00s0463g00020.t01	Wine grape	nucleus	21.52	29.54
VIT_12s0057g00560.t01	Wine grape	cytosol	20.32	27.89
VIT_04s0044g01370.t01	Wine grape	nucleus	19.52	25.7
VIT_19s0014g04940.t01	Wine grape	cytosol	19.65	25.21
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	18.98	25.13
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	16.58	21.05

Protein Annotations

EntrezGene:100241120	wikigene:100241120	MapMan:15.5.12	EMBL:AM471778	ProteinID:CAN68327	ProteinID:CAN68327.1
ProteinID:CCB56333	ProteinID:CCB56333.1	UniProt:F6HNW3	EMBL:FN595998	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	EntrezGene:LOC100241120	wikigene:LOC100241120
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF44	InterPro:TF_GRAS	UniParc:UPI00019848BC
ArrayExpress:VIT_13s0019g01810	EnsemblPlantsGene:VIT_13s0019g01810	EnsemblPlants:VIT_13s0019g01810.t01	RefSeq:XP_002278317	RefSeq:XP_002278317.2	RefSeq:XP_002278317.3
RefSeq:XP_010658550.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:3181830..3184765

Molecular Weight (calculated)

83859.0 Da

IEP (calculated)

6.275

GRAVY (calculated)

-0.476

Length

748 amino acids

Sequence
(BLAST)

001: MVMDRSLSRL YGSINGIKFS EDSVSILSDQ NLSNGPGSEV PIGCVDIPPF PPDPGSSNKA TWSSVRREED PHEDCDFSDV VLKYINEMLM EEKIEEKTCM
101: FQASSALQTT EKSFYDVIGE KYPPPIDHRL MKSSPYVEEN QENSSENSSG KCSSYSSITS STSDGNLVEH VWNGDLGECK SAHSASQSTS QSFSSSSNGA
201: SNIANGYVDS PMSTLRIPDI FSDNEAASLF RKGVEEASKF LPNSTGLFVD LVTENSRGLV KQDPKDVVVK MEKKHRNEYF TGVSRGKKNP YPEDLDSEEE
301: RNSKQSAVYN EMTVTSEMFD LVLLCNEGKG EAALRESFQN EANKTVQQDG QSKGSNTGKS RGRKKGGGKD LVDLTTLLTL CAQAVAADDW RTANEQLKQI
401: RQHASPTGDG RQRMAHYFAN GLEARMAGSG TRIYKAVITK PTSAAIVLKA YHLLLAVCPF KKLPNFFSNK TITKVAERAA RLHIVDFGIL YGFQWPSLIQ
501: RLASRPGGPP KLRITGIDLP QPGFRPAERV EETGHRLANY ARSFNVPFEF NAIAQKWETI QVEDLKIDSD ELLVVNCNCR FRNLLDETVV VESPRNIVLN
601: LIRKMNPDIF IQGIVNGGYG APFFLSRFRE ALFHFSALFD ILEATVPRQT LERTLIEREI FGWDAMNVIA CEGSERIERP ETYRQWQIRN LRAGFRQLPL
701: DQEIFNIAKE KVKLWYHKDF AVDQDGQWLL QGWKGRIIFA ISSWKAVQ

Best Arabidopsis Sequence Match ( AT1G07530.1 )
(BLAST)

001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS

Arabidopsis Description

SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.