Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g011630.1.1 | Tomato | cytosol | 22.53 | 96.47 |
| PGSC0003DMT400069949 | Potato | cytosol | 67.99 | 66.27 |
| VIT_13s0019g01810.t01 | Wine grape | cytosol | 59.07 | 57.49 |
| GSMUA_Achr10P... | Banana | nucleus | 34.62 | 57.01 |
| VIT_13s0019g01700.t01 | Wine grape | cytosol | 58.1 | 55.66 |
| PGSC0003DMT400049420 | Potato | cytosol | 50.69 | 55.57 |
| VIT_13s0019g01710.t01 | Wine grape | cytosol | 55.49 | 55.57 |
| VIT_13s0019g01780.t01 | Wine grape | nucleus | 45.33 | 55.0 |
| VIT_13s0019g01790.t01 | Wine grape | cytosol | 52.75 | 53.41 |
| GSMUA_Achr10P... | Banana | cytosol | 43.68 | 53.09 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 27.75 | 51.53 |
| PGSC0003DMT400022997 | Potato | cytosol, plastid | 53.57 | 51.25 |
| GSMUA_Achr7P15080_001 | Banana | cytosol | 41.9 | 51.0 |
| PGSC0003DMT400005480 | Potato | cytosol | 33.79 | 50.51 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 41.9 | 49.84 |
| Zm00001d034664_P001 | Maize | plastid | 37.09 | 48.3 |
| OQU92829 | Sorghum | cytosol | 48.63 | 48.23 |
| Zm00001d028603_P001 | Maize | cytosol | 48.49 | 48.09 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 27.2 | 47.94 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 29.81 | 47.59 |
| Os03t0690600-03 | Rice | cytosol | 47.53 | 47.33 |
| PGSC0003DMT400077972 | Potato | cytosol | 47.39 | 45.88 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 39.97 | 45.75 |
| KXG38103 | Sorghum | cytosol | 38.46 | 44.73 |
| PGSC0003DMT400063769 | Potato | cytosol, nucleus, peroxisome | 39.42 | 44.43 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 46.84 | 44.06 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 46.84 | 43.94 |
| KXG37250 | Sorghum | cytosol | 39.29 | 43.93 |
| KXG21080 | Sorghum | cytosol | 37.5 | 43.61 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 47.12 | 43.58 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 46.43 | 43.56 |
| KXG21079 | Sorghum | cytosol | 37.23 | 43.5 |
| Zm00001d011070_P001 | Maize | cytosol | 37.23 | 43.22 |
| Zm00001d035671_P001 | Maize | cytosol | 36.95 | 42.97 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 37.91 | 42.86 |
| GSMUA_AchrUn_... | Banana | cytosol | 38.6 | 42.64 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 38.19 | 42.44 |
| PGSC0003DMT400078286 | Potato | nucleus | 38.87 | 42.43 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 37.91 | 42.01 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 37.91 | 42.01 |
| Zm00001d047813_P002 | Maize | nucleus | 47.66 | 41.86 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 33.1 | 40.44 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 37.5 | 38.78 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 37.09 | 37.87 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 36.13 | 37.25 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 35.85 | 37.23 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 35.16 | 37.1 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 36.54 | 37.0 |
| Zm00001d033166_P001 | Maize | nucleus | 36.95 | 36.75 |
| Zm00001d035670_P001 | Maize | cytosol | 36.4 | 36.5 |
| OQU91407 | Sorghum | nucleus | 34.34 | 36.44 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 36.26 | 36.41 |
| EES18882 | Sorghum | cytosol | 36.54 | 36.29 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 35.99 | 36.24 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 35.71 | 36.06 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 35.99 | 35.94 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 35.3 | 35.64 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 35.3 | 35.6 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 34.89 | 35.52 |
| EES18880 | Sorghum | cytosol | 36.13 | 35.49 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 34.75 | 35.34 |
| EER91260 | Sorghum | nucleus | 34.89 | 35.23 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 34.89 | 35.18 |
| OQU91406 | Sorghum | nucleus | 35.85 | 34.89 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 34.89 | 34.89 |
| KXG38064 | Sorghum | nucleus | 34.34 | 34.72 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 31.87 | 34.32 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 34.75 | 33.42 |
| PGSC0003DMT400034763 | Potato | cytosol | 21.02 | 28.65 |
| PGSC0003DMT400060553 | Potato | cytosol | 20.33 | 28.24 |
| PGSC0003DMT400057111 | Potato | nucleus | 20.74 | 28.12 |
| PGSC0003DMT400015696 | Potato | cytosol | 20.6 | 28.04 |
| PGSC0003DMT400021748 | Potato | nucleus | 20.19 | 26.3 |
| PGSC0003DMT400056120 | Potato | cytosol | 19.51 | 25.4 |
| PGSC0003DMT400049492 | Potato | cytosol | 19.37 | 24.23 |
| PGSC0003DMT400063944 | Potato | cytosol, mitochondrion | 17.31 | 22.54 |
| PGSC0003DMT400076932 | Potato | nucleus | 14.56 | 17.49 |
| PGSC0003DMT400026240 | Potato | nucleus, plastid | 14.42 | 16.05 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400016258 | EnsemblPlantsGene:PGSC0003DMG400006352 | EntrezGene:102606191 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF44 | PFAM:PF03514 | PFscan:PS50985 | PGSC:PGSC0003DMG400006352 | RefSeq:XP_006346712.1 |
| SEG:seg | UniParc:UPI000294F6F9 | UniProt:M1A7D3 | MapMan:15.5.12 | : | : |
Description
GRAS family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400006352]
Coordinates
chr4:-:7457192..7460183
Molecular Weight (calculated)
82108.1 Da
IEP (calculated)
5.326
GRAVY (calculated)
-0.424
Length
728 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMDSRNYKG LYDATSGIQL KDDDDDKPFF QDLNLINHLR VSDALVERNL EPVDFVPSAM DNCHEDYDFS DVVLKYISQM LMEENIEEKT CMFQESAALQ
101: AAERSFYEVI GEKYPPSPIL DLGQDGRCGV DSSSNNYYSC GSDITDGLLC PNWNPDLGDV DSSHTQQFVI DSGTSQSSLS SPSSSGTVTD AHVDSPVSSI
201: QIPDIFSDSE SIMQFKKGVE EASKFLPTGN SLLLDVRYDV VVKEDNENGK DAVENRGKQK SPEGSRGKKN IHHDDVDVME ERSNKQSAVF YESTVRSDLF
301: DKVLLCSGGK NESALRESWQ VVSSKHAPEN VLPKGSNSRK SRGKKQGGKR DAVDLRTILT LCAQAVAADD RRTANEFLKQ IRQNSSPTGD GMQRVAHYFA
401: NGLEARMAGS GTQIYTDFIS MPTSAANILK AYQLFLAACP FRKLFNFFSN KTIMNVAETA STVHIIDFGI MYGFQWPCFI QRLSRRPGGP PKLRITGIDF
501: PNPGFRPAER VEETGRRLAD YAESFNVPFE FIAIAQKWET IKVEDLKIQK DEVLAVNCMY RFRNLLDETV VVNSPRDIVL NLIRKLNPDV YVQGIVNGAY
601: NAPFFITRFR EALFHYSSVF DMLEANIPRE IPERLLVEKL IFGREAMNVV ACEAAERIER PETYKQWQVR NIRAGFRQLP LNEEILRVAK DRVKAYHKDF
701: VIDVDGKWLL QGWKGRIMYA ASTWKGSL
101: AAERSFYEVI GEKYPPSPIL DLGQDGRCGV DSSSNNYYSC GSDITDGLLC PNWNPDLGDV DSSHTQQFVI DSGTSQSSLS SPSSSGTVTD AHVDSPVSSI
201: QIPDIFSDSE SIMQFKKGVE EASKFLPTGN SLLLDVRYDV VVKEDNENGK DAVENRGKQK SPEGSRGKKN IHHDDVDVME ERSNKQSAVF YESTVRSDLF
301: DKVLLCSGGK NESALRESWQ VVSSKHAPEN VLPKGSNSRK SRGKKQGGKR DAVDLRTILT LCAQAVAADD RRTANEFLKQ IRQNSSPTGD GMQRVAHYFA
401: NGLEARMAGS GTQIYTDFIS MPTSAANILK AYQLFLAACP FRKLFNFFSN KTIMNVAETA STVHIIDFGI MYGFQWPCFI QRLSRRPGGP PKLRITGIDF
501: PNPGFRPAER VEETGRRLAD YAESFNVPFE FIAIAQKWET IKVEDLKIQK DEVLAVNCMY RFRNLLDETV VVNSPRDIVL NLIRKLNPDV YVQGIVNGAY
601: NAPFFITRFR EALFHYSSVF DMLEANIPRE IPERLLVEKL IFGREAMNVV ACEAAERIER PETYKQWQVR NIRAGFRQLP LNEEILRVAK DRVKAYHKDF
701: VIDVDGKWLL QGWKGRIMYA ASTWKGSL
001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
Arabidopsis Description
SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.