Factsheet for PGSC0003DMT400034763

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g012510.1.1	Tomato	mitochondrion	96.25	94.83
PGSC0003DMT400060553	Potato	cytosol	74.53	75.95
PGSC0003DMT400021748	Potato	nucleus	74.53	71.2
VIT_00s0463g00020.t01	Wine grape	nucleus	68.16	66.79
KRH51175	Soybean	cytosol	61.42	60.52
KRH01979	Soybean	cytosol	61.42	60.18
KRH11548	Soybean	nucleus	62.17	60.14
KRH36572	Soybean	cytosol	61.42	59.85
GSMUA_Achr4P07010_001	Banana	cytosol	36.7	59.76
AT4G17230.1	Thale cress	cytosol	57.49	58.03
TraesCS5A01G414000.1	Wheat	cytosol	45.51	57.04
CDY35589	Canola	cytosol	55.62	55.93
CDY50128	Canola	cytosol, plastid	55.62	55.72
Bra021063.1-P	Field mustard	plastid	55.24	55.66
CDY58168	Canola	plastid	55.24	55.66
PGSC0003DMT400015696	Potato	cytosol	55.24	55.14
CDY42968	Canola	cytosol	55.24	55.14
TraesCS5A01G409800.1	Wheat	nucleus, plastid	51.31	54.69
Bra026237.1-P	Field mustard	plastid	54.68	54.58
GSMUA_Achr4P11050_001	Banana	nucleus	38.76	52.14
Zm00001d030500_P001	Maize	nucleus	52.25	51.48
GSMUA_AchrUn_...	Banana	nucleus	41.2	51.4
PGSC0003DMT400057111	Potato	nucleus	51.69	51.4
Os07t0583600-01	Rice	plasma membrane	52.25	51.29
TraesCS2B01G217500.1	Wheat	cytosol	53.18	51.26
EER95348	Sorghum	cytosol	51.12	50.93
EER97449	Sorghum	cytosol	51.87	50.64
Zm00001d048199_P001	Maize	mitochondrion, nucleus	50.75	50.56
TraesCS5D01G419400.2	Wheat	cytosol	52.06	50.55
Os03t0193000-01	Rice	plastid	50.56	50.47
HORVU2Hr1G036280.1	Barley	cytosol	52.43	50.27
TraesCS2A01G189600.1	Wheat	cytosol	52.06	50.18
TraesCS2D01G198200.1	Wheat	cytosol	52.06	50.09
Zm00001d006701_P001	Maize	cytosol	51.31	49.46
TraesCS4B01G266700.1	Wheat	cytosol	49.25	48.98
Zm00001d021946_P001	Maize	cytosol	51.12	48.92
HORVU4Hr1G071670.1	Barley	cytosol	48.88	48.69
TraesCS4D01G266400.1	Wheat	cytosol	48.69	48.51
TraesCS4A01G039000.1	Wheat	nucleus	44.19	48.26
HORVU5Hr1G099160.1	Barley	plastid	51.69	43.81
PGSC0003DMT400056120	Potato	cytosol	43.82	41.86
PGSC0003DMT400049492	Potato	cytosol	44.76	41.07
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	39.51	37.75
PGSC0003DMT400005480	Potato	cytosol	23.97	26.28
PGSC0003DMT400076932	Potato	nucleus	29.4	25.91
PGSC0003DMT400026240	Potato	nucleus, plastid	29.96	24.46
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	26.4	21.83
PGSC0003DMT400016258	Potato	cytosol	28.65	21.02
PGSC0003DMT400049420	Potato	cytosol	25.66	20.63
PGSC0003DMT400069949	Potato	cytosol	27.34	19.54
PGSC0003DMT400078286	Potato	nucleus	24.34	19.49
PGSC0003DMT400077972	Potato	cytosol	26.59	18.88
PGSC0003DMT400022997	Potato	cytosol, plastid	26.22	18.4

Protein Annotations

EnsemblPlants:PGSC0003DMT400034763	EnsemblPlantsGene:PGSC0003DMG400013356	EntrezGene:102590894	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:Scarecrow-like_13
InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF45	PFAM:PF03514	PFscan:PS50985	PGSC:PGSC0003DMG400013356
RefSeq:XP_006352339.1	UniParc:UPI0002963D2E	UniProt:M1B189	MapMan:15.5.12	:	:

Description

GRAS1 [Source:PGSC_GENE;Acc:PGSC0003DMG400013356]

Coordinates

chr11:+:383826..386186

Molecular Weight (calculated)

59608.7 Da

IEP (calculated)

5.381

GRAVY (calculated)

-0.339

Length

534 amino acids

Sequence
(BLAST)

001: MSGSVHGLYN QKMQQVEQYY TPYNVLKNSC KDTRSSGMQF SFQAQDEQFF TLDSSPATDY VVNDSPPALS VSSNRSPFSP QCSQSYMSDL HHSSDNTCGS
101: PLSGCSGIDD GDLRHVLREL ENKLLGPESD TDDSCSCSLN DMVSKPASVT RWNRVLDMAP GLNLKELLDA CAEAVSDADI STAEALMRAL EQRVSVSGEP
201: MERLGAYMLE GIRARLLSSG SIIYKKLKCK EPTGSELLSY MQVIFNMCPY YKFACMSANV VIREAMMNEN RIHIIDFQIA QGSQWIFLLH DLARRPGGPP
301: FVRITGVDDD ESAYARGGGL QLVGERLAEV AKSCGVPFEF HGAALSGCEV QLENLRVKHG EALAVNFPYM LHHMPDESVS TINHRDRLLR LVKSLSPKIV
401: TLVEQESNTN TAPFLPRFRE TLDYYTAMFE SIDAARPRDD KERISAEEHC VARDVVNIIA CEGADRVERH ELFGKWRLRL VMAGFTPCQL SPSVGETIKD
501: MLKEYNPNYR YAESEGALYL GWKNRALATS SAWR

Best Arabidopsis Sequence Match ( AT4G17230.2 )
(BLAST)

001: MQTSQKHHSA AGLHMLYPQV YCSPQFQAKD NKGFSDIPSK ENFFTLESST ASGSLPSYDS PSVSITSGRS PFSPQGSQSC ISDLHHSPDN VYGSPLSGVS
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN

Arabidopsis Description

SCL13SCARECROW-like 13 [Source:TAIR;Acc:AT4G17230]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.