Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G198200.1 | Wheat | cytosol | 97.47 | 97.3 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 96.39 | 96.39 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 96.75 | 96.23 |
| Os07t0583600-01 | Rice | plasma membrane | 84.3 | 85.85 |
| EER97449 | Sorghum | cytosol | 79.96 | 80.99 |
| Zm00001d006701_P001 | Maize | cytosol | 79.42 | 79.42 |
| Zm00001d021946_P001 | Maize | cytosol | 76.71 | 76.16 |
| GSMUA_Achr4P07010_001 | Banana | cytosol | 42.06 | 71.04 |
| Bra026077.1-P | Field mustard | cytosol | 36.82 | 69.39 |
| Bra015156.1-P | Field mustard | cytosol | 36.82 | 64.15 |
| GSMUA_Achr4P11050_001 | Banana | nucleus | 44.58 | 62.22 |
| CDY71156 | Canola | cytosol, plastid | 42.6 | 60.51 |
| CDY00883 | Canola | cytosol | 43.5 | 59.51 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 58.3 | 59.27 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.67 | 59.11 |
| AT2G04890.1 | Thale cress | cytosol | 43.86 | 58.84 |
| CDY22807 | Canola | nucleus | 44.58 | 58.81 |
| CDY37124 | Canola | nucleus | 44.58 | 58.81 |
| KRH74015 | Soybean | cytosol | 57.4 | 58.78 |
| KRH14104 | Soybean | cytosol | 57.58 | 58.53 |
| CDY07309 | Canola | cytosol | 25.27 | 58.33 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 57.22 | 58.17 |
| PGSC0003DMT400015696 | Potato | cytosol | 55.96 | 57.94 |
| Solyc07g047950.1.1 | Tomato | mitochondrion | 56.5 | 57.43 |
| AT5G48150.4 | Thale cress | cytosol | 50.0 | 56.53 |
| CDY05700 | Canola | cytosol, plastid | 50.0 | 55.73 |
| Bra018860.1-P | Field mustard | nucleus | 52.71 | 55.62 |
| Bra020715.1-P | Field mustard | cytosol, plastid | 49.82 | 55.53 |
| CDY71174 | Canola | cytosol, plastid | 49.82 | 55.53 |
| CDX86324 | Canola | cytosol, nucleus, plastid | 49.64 | 55.33 |
| CDY19966 | Canola | cytosol | 49.28 | 55.26 |
| CDY00074 | Canola | cytosol, plastid | 49.46 | 55.13 |
| CDY54511 | Canola | cytosol, nucleus, plastid | 49.46 | 55.13 |
| Solyc07g065270.1.1 | Tomato | nucleus | 53.25 | 54.83 |
| PGSC0003DMT400057111 | Potato | nucleus | 53.07 | 54.75 |
| Bra036185.1-P | Field mustard | cytosol | 48.92 | 54.75 |
| TraesCS4B01G266700.1 | Wheat | cytosol | 51.81 | 53.45 |
| PGSC0003DMT400034763 | Potato | cytosol | 51.26 | 53.18 |
| KRH11548 | Soybean | nucleus | 52.53 | 52.72 |
| PGSC0003DMT400060553 | Potato | cytosol | 49.82 | 52.67 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 51.62 | 52.48 |
| Solyc11g012510.1.1 | Tomato | mitochondrion | 51.26 | 52.4 |
| KRG98562 | Soybean | nucleus | 51.44 | 52.29 |
| KRH36572 | Soybean | cytosol | 51.26 | 51.82 |
| KRH14274 | Soybean | cytosol | 50.9 | 51.74 |
| KRH73868 | Soybean | cytosol | 50.72 | 51.56 |
| KRH46306 | Soybean | cytosol | 50.36 | 51.19 |
| KRH51175 | Soybean | cytosol | 50.0 | 51.11 |
| KRH01979 | Soybean | cytosol | 49.82 | 50.64 |
| Solyc04g014830.1.1 | Tomato | mitochondrion | 49.46 | 49.55 |
| PGSC0003DMT400021748 | Potato | nucleus | 49.28 | 48.84 |
| Bra021063.1-P | Field mustard | plastid | 46.57 | 48.68 |
| CDY58168 | Canola | plastid | 46.57 | 48.68 |
| CDY50128 | Canola | cytosol, plastid | 46.75 | 48.59 |
| CDY35589 | Canola | cytosol | 46.57 | 48.59 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 52.71 | 48.59 |
| CDY42968 | Canola | cytosol | 46.21 | 47.85 |
| Bra026237.1-P | Field mustard | plastid | 46.21 | 47.85 |
| AT4G17230.1 | Thale cress | cytosol | 45.67 | 47.83 |
| KRH38269 | Soybean | cytosol | 27.98 | 43.91 |
| TraesCS2B01G239400.1 | Wheat | cytosol | 43.68 | 42.46 |
| TraesCS3B01G441600.1 | Wheat | cytosol | 38.27 | 38.41 |
| Solyc05g054170.2.1 | Tomato | mitochondrion, nucleus | 20.94 | 34.83 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 20.4 | 27.36 |
| TraesCS2B01G413500.1 | Wheat | cytosol | 28.34 | 24.88 |
| TraesCS4B01G336200.1 | Wheat | cytosol | 24.01 | 22.77 |
| TraesCS4B01G141200.1 | Wheat | cytosol | 23.29 | 22.75 |
| TraesCS4B01G140800.1 | Wheat | cytosol | 24.19 | 22.67 |
| TraesCS4B01G141400.1 | Wheat | cytosol | 25.81 | 21.63 |
| TraesCS4B01G141300.1 | Wheat | cytosol | 25.09 | 20.62 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 24.19 | 20.4 |
| TraesCS7B01G077800.1 | Wheat | cytosol | 26.9 | 20.27 |
| TraesCS4B01G141100.1 | Wheat | cytosol | 22.74 | 20.03 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 24.73 | 19.46 |
| TraesCS7B01G078300.1 | Wheat | cytosol | 25.81 | 19.38 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 24.01 | 18.4 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 23.47 | 18.18 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 25.27 | 18.04 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 23.29 | 17.89 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 23.29 | 17.72 |
| TraesCS4B01G141500.1 | Wheat | peroxisome | 25.45 | 17.47 |
| TraesCS3B01G392600.1 | Wheat | cytosol | 25.45 | 17.3 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 23.47 | 17.17 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G217500.1 | EnsemblPlantsGene:TraesCS2B01G217500 | InterPro:CIGR2 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF31 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : |
Description
No Description!
Coordinates
chr2B:-:206119275..206120939
Molecular Weight (calculated)
61330.6 Da
IEP (calculated)
6.372
GRAVY (calculated)
-0.377
Length
554 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTPTSRMI HPFSNMQGQN PKQFQFQYSD NPQHPCRPYQ PSPDTHVVPQ HHYSLKSHSS DASYENQVAQ MKHTLDSSAA DGYMRHDSPS SHSFTPPSIR
101: SGSGSPSSHD DSHSDSTNGS PVSASCVTVT EDPNDLKQKL KDLEAEMLGP DAEIVNSLES SVAKQLSLEP EKWAQMMDFP RGNLKELLLA CARAVEEKNM
201: YAVDVMVPEL RKMVSVSGTP LERLGAYMVE GLVARLASSG HSIYKALRCK EPKSSDLLSY MHFLYEACPY FKFGYMSANG AIAEAVKGED RIHIIDFHIA
301: QGAQWISLLQ ALAARPGGPP TVRITGLDDS VSAYARGGGL DLVGRRLSHI AGLCKVPFEF HSVAMAGEEV EEGHLGVIPG EALAVNFTLE LHHIPDETVS
401: TANHRDRILR LVKSLRPKVL TLVEQESNTN TAPFPQRFAE TLEYYTAIFE SIDLTLPRDD KERVNMEQHC LAREVVNLIA CEGAERVERH EVFGKWKARL
501: TMAGFRPSPL SSLVNATIST LLQSYSENYK LAERDGALYL GWKNKPLVVS SAWH
101: SGSGSPSSHD DSHSDSTNGS PVSASCVTVT EDPNDLKQKL KDLEAEMLGP DAEIVNSLES SVAKQLSLEP EKWAQMMDFP RGNLKELLLA CARAVEEKNM
201: YAVDVMVPEL RKMVSVSGTP LERLGAYMVE GLVARLASSG HSIYKALRCK EPKSSDLLSY MHFLYEACPY FKFGYMSANG AIAEAVKGED RIHIIDFHIA
301: QGAQWISLLQ ALAARPGGPP TVRITGLDDS VSAYARGGGL DLVGRRLSHI AGLCKVPFEF HSVAMAGEEV EEGHLGVIPG EALAVNFTLE LHHIPDETVS
401: TANHRDRILR LVKSLRPKVL TLVEQESNTN TAPFPQRFAE TLEYYTAIFE SIDLTLPRDD KERVNMEQHC LAREVVNLIA CEGAERVERH EVFGKWKARL
501: TMAGFRPSPL SSLVNATIST LLQSYSENYK LAERDGALYL GWKNKPLVVS SAWH
001: MRIKMRLSVF IIPLVESRQA SGIINKQSTS LLIRFSLYLE ASISTKSFFS KSQRISQTQS PICLSANYYQ PDNLDMEATQ KHMIQEGSSM FYHQPSSVKQ
101: MDLSVQTFDS YCTLESSSGT KSHPCLNNKN NSSSTTSFSS NESPISQANN NNLSRFNNHS PEENNNSPLS GSSATNTNET ELSLMLKDLE TAMMEPDVDN
201: SYNNQGGFGQ QHGVVSSAMY RSMEMISRGD LKGVLYECAK AVENYDLEMT DWLISQLQQM VSVSGEPVQR LGAYMLEGLV ARLASSGSSI YKALRCKDPT
301: GPELLTYMHI LYEACPYFKF GYESANGAIA EAVKNESFVH IIDFQISQGG QWVSLIRALG ARPGGPPNVR ITGIDDPRSS FARQGGLELV GQRLGKLAEM
401: CGVPFEFHGA ALCCTEVEIE KLGVRNGEAL AVNFPLVLHH MPDESVTVEN HRDRLLRLVK HLSPNVVTLV EQEANTNTAP FLPRFVETMN HYLAVFESID
501: VKLARDHKER INVEQHCLAR EVVNLIACEG VEREERHEPL GKWRSRFHMA GFKPYPLSSY VNATIKGLLE SYSEKYTLEE RDGALYLGWK NQPLITSCAW
601: R
101: MDLSVQTFDS YCTLESSSGT KSHPCLNNKN NSSSTTSFSS NESPISQANN NNLSRFNNHS PEENNNSPLS GSSATNTNET ELSLMLKDLE TAMMEPDVDN
201: SYNNQGGFGQ QHGVVSSAMY RSMEMISRGD LKGVLYECAK AVENYDLEMT DWLISQLQQM VSVSGEPVQR LGAYMLEGLV ARLASSGSSI YKALRCKDPT
301: GPELLTYMHI LYEACPYFKF GYESANGAIA EAVKNESFVH IIDFQISQGG QWVSLIRALG ARPGGPPNVR ITGIDDPRSS FARQGGLELV GQRLGKLAEM
401: CGVPFEFHGA ALCCTEVEIE KLGVRNGEAL AVNFPLVLHH MPDESVTVEN HRDRLLRLVK HLSPNVVTLV EQEANTNTAP FLPRFVETMN HYLAVFESID
501: VKLARDHKER INVEQHCLAR EVVNLIACEG VEREERHEPL GKWRSRFHMA GFKPYPLSSY VNATIKGLLE SYSEKYTLEE RDGALYLGWK NQPLITSCAW
601: R
Arabidopsis Description
SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [mitochondrion,golgi]
SUBAcon: [mitochondrion,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.