Factsheet for PGSC0003DMT400015696

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g047950.1.1	Tomato	mitochondrion	97.57	95.78
VIT_12s0057g00560.t01	Wine grape	cytosol	76.07	74.68
KRH74015	Soybean	cytosol	73.64	72.83
KRH14104	Soybean	cytosol	73.83	72.48
GSMUA_Achr4P07010_001	Banana	cytosol	43.93	71.65
AT5G48150.4	Thale cress	cytosol	64.86	70.82
CDX86324	Canola	cytosol, nucleus, plastid	65.61	70.62
CDY54511	Canola	cytosol, nucleus, plastid	65.23	70.22
Bra020715.1-P	Field mustard	cytosol, plastid	63.93	68.81
CDY71174	Canola	cytosol, plastid	63.93	68.81
CDY05700	Canola	cytosol, plastid	63.93	68.81
Bra036185.1-P	Field mustard	cytosol	63.36	68.48
CDY19966	Canola	cytosol	63.18	68.42
CDY00074	Canola	cytosol, plastid	63.55	68.41
GSMUA_Achr4P11050_001	Banana	nucleus	46.17	62.22
TraesCS5A01G414000.1	Wheat	cytosol	49.35	61.97
PGSC0003DMT400057111	Potato	nucleus	61.5	61.27
GSMUA_AchrUn_...	Banana	nucleus	48.6	60.75
TraesCS5A01G409800.1	Wheat	nucleus, plastid	56.45	60.28
Zm00001d030500_P001	Maize	nucleus	57.38	56.64
Os07t0583600-01	Rice	plasma membrane	57.57	56.62
TraesCS5D01G419400.2	Wheat	cytosol	57.57	56.0
TraesCS2B01G217500.1	Wheat	cytosol	57.94	55.96
Os03t0193000-01	Rice	plastid	55.89	55.89
HORVU2Hr1G036280.1	Barley	cytosol	57.94	55.66
TraesCS2A01G189600.1	Wheat	cytosol	57.38	55.42
TraesCS2D01G198200.1	Wheat	cytosol	57.38	55.32
PGSC0003DMT400034763	Potato	cytosol	55.14	55.24
Zm00001d006701_P001	Maize	cytosol	57.01	55.05
EER97449	Sorghum	cytosol	56.26	55.03
Zm00001d048199_P001	Maize	mitochondrion, nucleus	54.95	54.85
EER95348	Sorghum	cytosol	54.77	54.66
Zm00001d021946_P001	Maize	cytosol	56.82	54.48
PGSC0003DMT400060553	Potato	cytosol	52.9	54.01
HORVU4Hr1G071670.1	Barley	cytosol	54.02	53.92
TraesCS4D01G266400.1	Wheat	cytosol	54.02	53.92
TraesCS4B01G266700.1	Wheat	cytosol	53.83	53.63
TraesCS4A01G039000.1	Wheat	nucleus	48.04	52.56
PGSC0003DMT400021748	Potato	nucleus	53.08	50.8
HORVU5Hr1G099160.1	Barley	plastid	57.94	49.21
PGSC0003DMT400049492	Potato	cytosol	49.53	45.53
PGSC0003DMT400056120	Potato	cytosol	47.48	45.44
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	42.99	41.14
PGSC0003DMT400005480	Potato	cytosol	25.05	27.52
PGSC0003DMT400076932	Potato	nucleus	29.91	26.4
PGSC0003DMT400026240	Potato	nucleus, plastid	29.91	24.46
PGSC0003DMT400049420	Potato	cytosol	26.54	21.39
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	25.61	21.21
PGSC0003DMT400016258	Potato	cytosol	28.04	20.6
PGSC0003DMT400069949	Potato	cytosol	27.85	19.95
PGSC0003DMT400078286	Potato	nucleus	24.67	19.79
PGSC0003DMT400022997	Potato	cytosol, plastid	27.48	19.32
PGSC0003DMT400077972	Potato	cytosol	26.92	19.15

Protein Annotations

MapMan:15.5.12	GO:GO:0003674	GO:GO:0004871	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009585	GO:GO:0009605
GO:GO:0009628	GO:GO:0009640	GO:GO:0009791	GO:GO:0009987	InterPro:IPR005202	UniProt:M1A6E9
PFAM:PF03514	EnsemblPlantsGene:PGSC0003DMG400006132	PGSC:PGSC0003DMG400006132	EnsemblPlants:PGSC0003DMT400015696	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF57	InterPro:TF_GRAS	UniParc:UPI0002962749	:	:	:

Description

GRAS family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400006132]

Coordinates

chr7:+:44498563..44500780

Molecular Weight (calculated)

59561.9 Da

IEP (calculated)

6.160

GRAVY (calculated)

-0.239

Length

535 amino acids

Sequence
(BLAST)

001: MSNTLYCEPV QKAEAYCLPR FQTLESHLSY INGSLGGNHS FQTYRDRYCM LEASSATGSY GVYHSPSTAS FSSNGSTTCN QESQPYLSDI RQSPETTNYG
101: SPISGSCITD DATDFMHKLK ELETVMLGPD ADFQESYDNS LASSIASSEI DSWRQMMLAI PRRDLKQVLI ACAKAVSDGE LVTAQVLISE LRQMVSVSGE
201: PIQRLGAYIL EGLVARLGAS GSSICKSLRC KEPASFELLS YMHVLYEICP YFKFGYMSAN GAIAEAMKDE NRVHIIDFQI AQGSQWVPMI QAFAARPGGP
301: PHIRITGIDD STSAYARGGG LDIVGQRLSK LAKTFKVPFE FHPAAMSGSD VQLKNLGIQP GEALAVNFAF TLHHMPDESV STENHRDRLL RMVKNLNPKV
401: VTLVEQESNT NTAAFFPRFL ETLDYYSAMF ESIDMTLSRG HKERINVEQH CLARDVVNII ACEGIERVER HELLGKWKSR FRMAGFNPYP LSSLVNATIK
501: TLLESYSDKY RLEERDGALY LGWMNRDLVA SCAWK

Best Arabidopsis Sequence Match ( AT5G48150.3 )
(BLAST)

001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK

Arabidopsis Description

PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.